Experiment: with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0055 and Dsui_0056 overlap by 14 nucleotides Dsui_0056 and Dsui_0057 overlap by 4 nucleotides Dsui_0057 and Dsui_0058 are separated by 7 nucleotides Dsui_0058 and Dsui_0059 overlap by 62 nucleotides
Dsui_0055: Dsui_0055 - glycosyltransferase, at 52,198 to 53,385
_0055
Dsui_0056: Dsui_0056 - glycosyl transferase, at 53,372 to 54,301
_0056
Dsui_0057: Dsui_0057 - glycosyltransferase, at 54,298 to 55,488
_0057
Dsui_0058: Dsui_0058 - Glycosyl transferase family 11, at 55,496 to 56,431
_0058
Dsui_0059: Dsui_0059 - glycosyl transferase, at 56,370 to 57,104
_0059
Position (kb) 54
55
56 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 53.499 kb on - strand, within Dsui_0056 at 53.557 kb on - strand, within Dsui_0056 at 53.593 kb on - strand, within Dsui_0056 at 53.637 kb on - strand, within Dsui_0056 at 53.650 kb on + strand at 53.712 kb on - strand, within Dsui_0056 at 53.770 kb on - strand, within Dsui_0056 at 53.790 kb on + strand, within Dsui_0056 at 53.829 kb on + strand, within Dsui_0056 at 53.952 kb on - strand, within Dsui_0056 at 54.093 kb on - strand, within Dsui_0056 at 54.093 kb on - strand, within Dsui_0056 at 54.279 kb on + strand at 54.340 kb on - strand at 54.430 kb on + strand, within Dsui_0057 at 54.430 kb on + strand, within Dsui_0057 at 54.430 kb on + strand, within Dsui_0057 at 54.457 kb on - strand, within Dsui_0057 at 54.557 kb on + strand, within Dsui_0057 at 54.585 kb on + strand, within Dsui_0057 at 54.845 kb on - strand, within Dsui_0057 at 54.848 kb on - strand, within Dsui_0057 at 54.873 kb on + strand, within Dsui_0057 at 54.873 kb on + strand, within Dsui_0057 at 54.881 kb on - strand, within Dsui_0057 at 54.910 kb on - strand, within Dsui_0057 at 54.961 kb on - strand, within Dsui_0057 at 55.089 kb on - strand, within Dsui_0057 at 55.227 kb on + strand, within Dsui_0057 at 55.235 kb on - strand, within Dsui_0057 at 55.262 kb on - strand, within Dsui_0057 at 55.384 kb on - strand at 55.394 kb on - strand at 55.397 kb on + strand at 55.405 kb on - strand at 55.438 kb on - strand at 55.455 kb on - strand at 55.455 kb on - strand at 55.461 kb on + strand at 55.483 kb on + strand at 55.702 kb on + strand, within Dsui_0058 at 55.727 kb on + strand, within Dsui_0058 at 55.784 kb on + strand, within Dsui_0058 at 55.792 kb on - strand, within Dsui_0058 at 55.833 kb on + strand, within Dsui_0058 at 55.856 kb on + strand, within Dsui_0058 at 55.897 kb on - strand, within Dsui_0058 at 55.935 kb on + strand, within Dsui_0058 at 55.947 kb on - strand, within Dsui_0058 at 55.964 kb on - strand, within Dsui_0058 at 56.149 kb on - strand, within Dsui_0058 at 56.159 kb on + strand, within Dsui_0058 at 56.193 kb on - strand, within Dsui_0058 at 56.250 kb on - strand, within Dsui_0058 at 56.367 kb on + strand at 56.386 kb on - strand at 56.391 kb on + strand at 56.426 kb on - strand at 56.464 kb on + strand, within Dsui_0059
Per-strain Table
Position Strand Gene LocusTag Fraction with 1 mM Stressor (H2S) + 10 mM ClO4 and 20 mM lactate remove 53,499 - Dsui_0056 0.14 -1.3 53,557 - Dsui_0056 0.20 -1.5 53,593 - Dsui_0056 0.24 -2.8 53,637 - Dsui_0056 0.28 -1.1 53,650 + -0.8 53,712 - Dsui_0056 0.37 -1.1 53,770 - Dsui_0056 0.43 -3.2 53,790 + Dsui_0056 0.45 -1.4 53,829 + Dsui_0056 0.49 -2.3 53,952 - Dsui_0056 0.62 -1.4 54,093 - Dsui_0056 0.78 -2.3 54,093 - Dsui_0056 0.78 -4.5 54,279 + -0.0 54,340 - +0.4 54,430 + Dsui_0057 0.11 -1.1 54,430 + Dsui_0057 0.11 +1.7 54,430 + Dsui_0057 0.11 -3.0 54,457 - Dsui_0057 0.13 -0.6 54,557 + Dsui_0057 0.22 -3.8 54,585 + Dsui_0057 0.24 -2.6 54,845 - Dsui_0057 0.46 -2.6 54,848 - Dsui_0057 0.46 -0.9 54,873 + Dsui_0057 0.48 -3.8 54,873 + Dsui_0057 0.48 -1.7 54,881 - Dsui_0057 0.49 -1.8 54,910 - Dsui_0057 0.51 -4.0 54,961 - Dsui_0057 0.56 -4.1 55,089 - Dsui_0057 0.66 -0.5 55,227 + Dsui_0057 0.78 -0.9 55,235 - Dsui_0057 0.79 -0.0 55,262 - Dsui_0057 0.81 -3.5 55,384 - -1.6 55,394 - -1.0 55,397 + -3.8 55,405 - -1.7 55,438 - -0.2 55,455 - -1.4 55,455 - -3.7 55,461 + -1.3 55,483 + -1.2 55,702 + Dsui_0058 0.22 -1.8 55,727 + Dsui_0058 0.25 -1.4 55,784 + Dsui_0058 0.31 -0.4 55,792 - Dsui_0058 0.32 -2.4 55,833 + Dsui_0058 0.36 -2.7 55,856 + Dsui_0058 0.38 -3.7 55,897 - Dsui_0058 0.43 -1.7 55,935 + Dsui_0058 0.47 -1.8 55,947 - Dsui_0058 0.48 -2.6 55,964 - Dsui_0058 0.50 -2.2 56,149 - Dsui_0058 0.70 -2.3 56,159 + Dsui_0058 0.71 -3.8 56,193 - Dsui_0058 0.74 -2.0 56,250 - Dsui_0058 0.81 -0.3 56,367 + -0.3 56,386 - +1.3 56,391 + -2.7 56,426 - -2.0 56,464 + Dsui_0059 0.13 -1.7
Or see this region's nucleotide sequence