Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_19125 and CSW01_19130 are separated by 51 nucleotides CSW01_19130 and CSW01_19135 are separated by 115 nucleotides CSW01_19135 and CSW01_19140 are separated by 96 nucleotides CSW01_19140 and CSW01_19145 are separated by 255 nucleotides
CSW01_19125: CSW01_19125 - branched-chain amino acid ABC transporter, at 955,021 to 955,338
_19125
CSW01_19130: CSW01_19130 - FAA hydrolase family protein, at 955,390 to 956,004
_19130
CSW01_19135: CSW01_19135 - MarR family transcriptional regulator, at 956,120 to 956,578
_19135
CSW01_19140: CSW01_19140 - organic hydroperoxide resistance protein, at 956,675 to 957,112
_19140
CSW01_19145: CSW01_19145 - porin, at 957,368 to 958,363
_19145
Position (kb) 956
957 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 955.136 kb on + strand, within CSW01_19125 at 955.247 kb on - strand, within CSW01_19125 at 955.286 kb on - strand, within CSW01_19125 at 955.296 kb on - strand, within CSW01_19125 at 955.312 kb on - strand at 955.319 kb on + strand at 955.322 kb on - strand at 955.322 kb on - strand at 955.333 kb on + strand at 955.361 kb on - strand at 955.361 kb on - strand at 955.365 kb on - strand at 955.415 kb on + strand at 955.425 kb on + strand at 955.428 kb on - strand at 955.433 kb on - strand at 955.480 kb on + strand, within CSW01_19130 at 955.511 kb on - strand, within CSW01_19130 at 955.604 kb on + strand, within CSW01_19130 at 955.604 kb on - strand, within CSW01_19130 at 955.682 kb on - strand, within CSW01_19130 at 955.723 kb on - strand, within CSW01_19130 at 955.723 kb on - strand, within CSW01_19130 at 955.732 kb on + strand, within CSW01_19130 at 955.733 kb on - strand, within CSW01_19130 at 955.735 kb on - strand, within CSW01_19130 at 955.815 kb on - strand, within CSW01_19130 at 955.852 kb on - strand, within CSW01_19130 at 955.868 kb on + strand, within CSW01_19130 at 955.868 kb on + strand, within CSW01_19130 at 955.876 kb on - strand, within CSW01_19130 at 955.917 kb on - strand, within CSW01_19130 at 955.942 kb on - strand, within CSW01_19130 at 956.000 kb on - strand at 956.011 kb on + strand at 956.019 kb on - strand at 956.173 kb on + strand, within CSW01_19135 at 956.181 kb on - strand, within CSW01_19135 at 956.181 kb on - strand, within CSW01_19135 at 956.181 kb on - strand, within CSW01_19135 at 956.220 kb on - strand, within CSW01_19135 at 956.220 kb on - strand, within CSW01_19135 at 956.222 kb on + strand, within CSW01_19135 at 956.222 kb on + strand, within CSW01_19135 at 956.225 kb on - strand, within CSW01_19135 at 956.261 kb on - strand, within CSW01_19135 at 956.419 kb on + strand, within CSW01_19135 at 956.472 kb on + strand, within CSW01_19135 at 956.472 kb on + strand, within CSW01_19135 at 956.503 kb on + strand, within CSW01_19135 at 956.503 kb on - strand, within CSW01_19135 at 956.506 kb on - strand, within CSW01_19135 at 956.574 kb on + strand at 956.582 kb on - strand at 956.582 kb on - strand at 956.729 kb on + strand, within CSW01_19140 at 956.729 kb on - strand, within CSW01_19140 at 956.731 kb on + strand, within CSW01_19140 at 956.742 kb on - strand, within CSW01_19140 at 956.742 kb on - strand, within CSW01_19140 at 956.743 kb on + strand, within CSW01_19140 at 956.806 kb on - strand, within CSW01_19140 at 956.828 kb on - strand, within CSW01_19140 at 956.844 kb on + strand, within CSW01_19140 at 956.850 kb on - strand, within CSW01_19140 at 956.948 kb on + strand, within CSW01_19140 at 956.978 kb on - strand, within CSW01_19140 at 956.978 kb on - strand, within CSW01_19140 at 957.035 kb on - strand, within CSW01_19140 at 957.035 kb on - strand, within CSW01_19140 at 957.040 kb on + strand, within CSW01_19140 at 957.040 kb on + strand, within CSW01_19140 at 957.045 kb on + strand, within CSW01_19140 at 957.048 kb on - strand, within CSW01_19140 at 957.060 kb on - strand, within CSW01_19140 at 957.072 kb on + strand at 957.075 kb on - strand at 957.088 kb on - strand at 957.098 kb on + strand at 957.099 kb on + strand at 957.099 kb on + strand at 957.214 kb on - strand at 957.319 kb on - strand at 957.416 kb on + strand at 957.424 kb on - strand at 957.430 kb on - strand at 957.485 kb on - strand, within CSW01_19145 at 957.516 kb on - strand, within CSW01_19145 at 957.531 kb on + strand, within CSW01_19145
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 955,136 + CSW01_19125 0.36 -1.2 955,247 - CSW01_19125 0.71 -3.0 955,286 - CSW01_19125 0.83 +0.7 955,296 - CSW01_19125 0.86 -2.5 955,312 - +0.3 955,319 + +1.4 955,322 - -3.0 955,322 - +0.3 955,333 + +1.1 955,361 - -2.6 955,361 - -0.8 955,365 - -1.1 955,415 + -1.9 955,425 + +0.8 955,428 - +0.1 955,433 - +2.3 955,480 + CSW01_19130 0.15 -1.5 955,511 - CSW01_19130 0.20 +1.5 955,604 + CSW01_19130 0.35 +0.8 955,604 - CSW01_19130 0.35 -0.1 955,682 - CSW01_19130 0.47 -1.5 955,723 - CSW01_19130 0.54 +0.5 955,723 - CSW01_19130 0.54 -1.8 955,732 + CSW01_19130 0.56 -0.3 955,733 - CSW01_19130 0.56 +1.4 955,735 - CSW01_19130 0.56 +0.9 955,815 - CSW01_19130 0.69 -2.9 955,852 - CSW01_19130 0.75 -2.0 955,868 + CSW01_19130 0.78 -1.8 955,868 + CSW01_19130 0.78 -1.0 955,876 - CSW01_19130 0.79 +1.3 955,917 - CSW01_19130 0.86 +1.0 955,942 - CSW01_19130 0.90 +0.4 956,000 - -0.5 956,011 + +0.0 956,019 - +0.6 956,173 + CSW01_19135 0.12 -0.5 956,181 - CSW01_19135 0.13 +1.4 956,181 - CSW01_19135 0.13 -1.3 956,181 - CSW01_19135 0.13 +0.1 956,220 - CSW01_19135 0.22 +0.2 956,220 - CSW01_19135 0.22 +0.2 956,222 + CSW01_19135 0.22 +1.2 956,222 + CSW01_19135 0.22 +0.9 956,225 - CSW01_19135 0.23 -0.8 956,261 - CSW01_19135 0.31 +1.8 956,419 + CSW01_19135 0.65 -0.3 956,472 + CSW01_19135 0.77 -1.7 956,472 + CSW01_19135 0.77 +1.0 956,503 + CSW01_19135 0.83 +0.7 956,503 - CSW01_19135 0.83 +0.2 956,506 - CSW01_19135 0.84 +0.1 956,574 + +0.8 956,582 - +0.8 956,582 - -0.4 956,729 + CSW01_19140 0.12 +0.5 956,729 - CSW01_19140 0.12 +0.5 956,731 + CSW01_19140 0.13 -0.1 956,742 - CSW01_19140 0.15 -0.1 956,742 - CSW01_19140 0.15 -0.1 956,743 + CSW01_19140 0.16 -1.4 956,806 - CSW01_19140 0.30 +0.9 956,828 - CSW01_19140 0.35 -1.9 956,844 + CSW01_19140 0.39 -1.7 956,850 - CSW01_19140 0.40 -1.8 956,948 + CSW01_19140 0.62 -3.8 956,978 - CSW01_19140 0.69 +1.0 956,978 - CSW01_19140 0.69 +1.9 957,035 - CSW01_19140 0.82 +0.6 957,035 - CSW01_19140 0.82 +0.1 957,040 + CSW01_19140 0.83 +2.0 957,040 + CSW01_19140 0.83 -0.7 957,045 + CSW01_19140 0.84 +2.4 957,048 - CSW01_19140 0.85 -1.9 957,060 - CSW01_19140 0.88 +0.3 957,072 + +0.7 957,075 - +0.5 957,088 - -3.5 957,098 + +1.2 957,099 + +0.5 957,099 + -1.0 957,214 - -0.7 957,319 - +0.1 957,416 + +0.6 957,424 - +0.1 957,430 - -0.1 957,485 - CSW01_19145 0.12 -1.9 957,516 - CSW01_19145 0.15 +1.2 957,531 + CSW01_19145 0.16 -1.6
Or see this region's nucleotide sequence