Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18895 and CSW01_18900 are separated by 75 nucleotides CSW01_18900 and CSW01_18905 are separated by 168 nucleotides CSW01_18905 and CSW01_18910 are separated by 118 nucleotides CSW01_18910 and CSW01_18915 are separated by 118 nucleotides
CSW01_18895: CSW01_18895 - chemotaxis protein CheV, at 901,318 to 902,238
_18895
CSW01_18900: CSW01_18900 - MarR family transcriptional regulator, at 902,314 to 902,838
_18900
CSW01_18905: CSW01_18905 - GGDEF domain-containing protein, at 903,007 to 904,026
_18905
CSW01_18910: CSW01_18910 - malate synthase, at 904,145 to 904,753
_18910
CSW01_18915: CSW01_18915 - DUF3612 domain-containing protein, at 904,872 to 906,389
_18915
Position (kb) 903
904
905 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 902.143 kb on + strand, within CSW01_18895 at 902.262 kb on - strand at 902.319 kb on - strand at 902.320 kb on - strand at 902.322 kb on + strand at 902.322 kb on + strand at 902.489 kb on + strand, within CSW01_18900 at 902.489 kb on + strand, within CSW01_18900 at 902.497 kb on - strand, within CSW01_18900 at 902.518 kb on - strand, within CSW01_18900 at 902.544 kb on + strand, within CSW01_18900 at 902.576 kb on - strand, within CSW01_18900 at 902.589 kb on + strand, within CSW01_18900 at 902.589 kb on + strand, within CSW01_18900 at 902.589 kb on + strand, within CSW01_18900 at 902.597 kb on - strand, within CSW01_18900 at 902.597 kb on - strand, within CSW01_18900 at 902.597 kb on - strand, within CSW01_18900 at 902.597 kb on - strand, within CSW01_18900 at 902.597 kb on - strand, within CSW01_18900 at 902.597 kb on - strand, within CSW01_18900 at 902.628 kb on + strand, within CSW01_18900 at 902.628 kb on + strand, within CSW01_18900 at 902.635 kb on - strand, within CSW01_18900 at 902.654 kb on - strand, within CSW01_18900 at 902.663 kb on + strand, within CSW01_18900 at 902.682 kb on + strand, within CSW01_18900 at 902.782 kb on + strand, within CSW01_18900 at 902.807 kb on - strand at 902.841 kb on + strand at 902.861 kb on + strand at 902.874 kb on + strand at 902.920 kb on - strand at 902.922 kb on - strand at 903.114 kb on + strand, within CSW01_18905 at 903.316 kb on - strand, within CSW01_18905 at 903.372 kb on - strand, within CSW01_18905 at 903.438 kb on + strand, within CSW01_18905 at 903.446 kb on - strand, within CSW01_18905 at 903.494 kb on + strand, within CSW01_18905 at 903.568 kb on + strand, within CSW01_18905 at 903.609 kb on + strand, within CSW01_18905 at 903.609 kb on + strand, within CSW01_18905 at 903.617 kb on - strand, within CSW01_18905 at 903.617 kb on - strand, within CSW01_18905 at 903.617 kb on - strand, within CSW01_18905 at 903.617 kb on - strand, within CSW01_18905 at 903.632 kb on + strand, within CSW01_18905 at 903.664 kb on + strand, within CSW01_18905 at 903.665 kb on - strand, within CSW01_18905 at 903.741 kb on - strand, within CSW01_18905 at 903.863 kb on + strand, within CSW01_18905 at 903.900 kb on + strand, within CSW01_18905 at 903.944 kb on + strand at 904.020 kb on + strand at 904.020 kb on + strand at 904.028 kb on - strand at 904.028 kb on - strand at 904.028 kb on - strand at 904.082 kb on + strand at 904.090 kb on - strand at 904.090 kb on - strand at 904.184 kb on + strand at 904.194 kb on + strand at 904.194 kb on + strand at 904.229 kb on + strand, within CSW01_18910 at 904.252 kb on + strand, within CSW01_18910 at 904.260 kb on - strand, within CSW01_18910 at 904.264 kb on + strand, within CSW01_18910 at 904.283 kb on - strand, within CSW01_18910 at 904.304 kb on + strand, within CSW01_18910 at 904.351 kb on + strand, within CSW01_18910 at 904.411 kb on - strand, within CSW01_18910 at 904.411 kb on - strand, within CSW01_18910 at 904.523 kb on + strand, within CSW01_18910 at 904.726 kb on - strand at 904.978 kb on + strand at 904.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 902,143 + CSW01_18895 0.90 -0.2 902,262 - +0.6 902,319 - -0.1 902,320 - -0.7 902,322 + +1.0 902,322 + -0.7 902,489 + CSW01_18900 0.33 -2.7 902,489 + CSW01_18900 0.33 +0.3 902,497 - CSW01_18900 0.35 +0.4 902,518 - CSW01_18900 0.39 -2.4 902,544 + CSW01_18900 0.44 -2.2 902,576 - CSW01_18900 0.50 -2.2 902,589 + CSW01_18900 0.52 +0.4 902,589 + CSW01_18900 0.52 -2.7 902,589 + CSW01_18900 0.52 -2.7 902,597 - CSW01_18900 0.54 +1.1 902,597 - CSW01_18900 0.54 -2.1 902,597 - CSW01_18900 0.54 -2.0 902,597 - CSW01_18900 0.54 +0.5 902,597 - CSW01_18900 0.54 -0.9 902,597 - CSW01_18900 0.54 -1.6 902,628 + CSW01_18900 0.60 -2.2 902,628 + CSW01_18900 0.60 +0.7 902,635 - CSW01_18900 0.61 +1.0 902,654 - CSW01_18900 0.65 +2.4 902,663 + CSW01_18900 0.66 +1.7 902,682 + CSW01_18900 0.70 +0.2 902,782 + CSW01_18900 0.89 +0.8 902,807 - -0.2 902,841 + -2.8 902,861 + -0.1 902,874 + +1.2 902,920 - -0.5 902,922 - +0.8 903,114 + CSW01_18905 0.10 -2.6 903,316 - CSW01_18905 0.30 -2.3 903,372 - CSW01_18905 0.36 -0.9 903,438 + CSW01_18905 0.42 -4.7 903,446 - CSW01_18905 0.43 -0.9 903,494 + CSW01_18905 0.48 +0.7 903,568 + CSW01_18905 0.55 -1.7 903,609 + CSW01_18905 0.59 -0.0 903,609 + CSW01_18905 0.59 -1.5 903,617 - CSW01_18905 0.60 -0.9 903,617 - CSW01_18905 0.60 -1.2 903,617 - CSW01_18905 0.60 +0.1 903,617 - CSW01_18905 0.60 -1.8 903,632 + CSW01_18905 0.61 -1.3 903,664 + CSW01_18905 0.64 -1.3 903,665 - CSW01_18905 0.65 +0.7 903,741 - CSW01_18905 0.72 -0.5 903,863 + CSW01_18905 0.84 +0.7 903,900 + CSW01_18905 0.88 -1.6 903,944 + -2.0 904,020 + -0.1 904,020 + +1.1 904,028 - -1.1 904,028 - +1.2 904,028 - +0.9 904,082 + -0.9 904,090 - +1.5 904,090 - +0.6 904,184 + +2.3 904,194 + -0.2 904,194 + -1.1 904,229 + CSW01_18910 0.14 +1.0 904,252 + CSW01_18910 0.18 +0.1 904,260 - CSW01_18910 0.19 -1.8 904,264 + CSW01_18910 0.20 -0.3 904,283 - CSW01_18910 0.23 +1.4 904,304 + CSW01_18910 0.26 -2.8 904,351 + CSW01_18910 0.34 +0.1 904,411 - CSW01_18910 0.44 -1.5 904,411 - CSW01_18910 0.44 +0.4 904,523 + CSW01_18910 0.62 +0.2 904,726 - -0.3 904,978 + +1.2 904,998 - -0.9
Or see this region's nucleotide sequence