Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18755

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18750 and CSW01_18755 are separated by 62 nucleotidesCSW01_18755 and CSW01_18760 are separated by 562 nucleotides CSW01_18750: CSW01_18750 - methyl-accepting chemotaxis protein, at 872,713 to 874,587 _18750 CSW01_18755: CSW01_18755 - flavodoxin, at 874,650 to 876,467 _18755 CSW01_18760: CSW01_18760 - dihydroorotase, at 877,030 to 878,058 _18760 Position (kb) 874 875 876 877Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 873.788 kb on + strand, within CSW01_18750at 873.809 kb on + strand, within CSW01_18750at 873.809 kb on + strand, within CSW01_18750at 873.809 kb on + strand, within CSW01_18750at 873.836 kb on + strand, within CSW01_18750at 873.844 kb on - strand, within CSW01_18750at 874.058 kb on - strand, within CSW01_18750at 874.079 kb on - strand, within CSW01_18750at 874.079 kb on - strand, within CSW01_18750at 874.079 kb on - strand, within CSW01_18750at 874.079 kb on - strand, within CSW01_18750at 874.079 kb on - strand, within CSW01_18750at 874.079 kb on - strand, within CSW01_18750at 874.079 kb on - strand, within CSW01_18750at 874.198 kb on - strand, within CSW01_18750at 874.217 kb on + strand, within CSW01_18750at 874.225 kb on - strand, within CSW01_18750at 874.225 kb on - strand, within CSW01_18750at 874.391 kb on + strand, within CSW01_18750at 874.590 kb on - strandat 874.738 kb on + strandat 874.738 kb on + strandat 874.739 kb on + strandat 874.746 kb on - strandat 874.746 kb on - strandat 874.746 kb on - strandat 874.747 kb on - strandat 874.883 kb on + strand, within CSW01_18755at 875.093 kb on + strand, within CSW01_18755at 875.101 kb on - strand, within CSW01_18755at 875.125 kb on + strand, within CSW01_18755at 875.190 kb on + strand, within CSW01_18755at 875.190 kb on + strand, within CSW01_18755at 875.190 kb on + strand, within CSW01_18755at 875.198 kb on - strand, within CSW01_18755at 875.198 kb on - strand, within CSW01_18755at 875.198 kb on - strand, within CSW01_18755at 875.198 kb on - strand, within CSW01_18755at 875.254 kb on - strand, within CSW01_18755at 875.270 kb on + strand, within CSW01_18755at 875.270 kb on + strand, within CSW01_18755at 875.270 kb on + strand, within CSW01_18755at 875.270 kb on + strand, within CSW01_18755at 875.278 kb on - strand, within CSW01_18755at 875.278 kb on - strand, within CSW01_18755at 875.278 kb on - strand, within CSW01_18755at 875.323 kb on + strand, within CSW01_18755at 875.342 kb on + strand, within CSW01_18755at 875.347 kb on + strand, within CSW01_18755at 875.347 kb on + strand, within CSW01_18755at 875.487 kb on - strand, within CSW01_18755at 875.497 kb on - strand, within CSW01_18755at 875.536 kb on + strand, within CSW01_18755at 875.549 kb on - strand, within CSW01_18755at 875.567 kb on + strand, within CSW01_18755at 875.567 kb on + strand, within CSW01_18755at 875.567 kb on + strand, within CSW01_18755at 875.575 kb on - strand, within CSW01_18755at 875.575 kb on - strand, within CSW01_18755at 875.575 kb on - strand, within CSW01_18755at 875.603 kb on - strand, within CSW01_18755at 875.612 kb on + strand, within CSW01_18755at 875.614 kb on + strand, within CSW01_18755at 875.614 kb on + strand, within CSW01_18755at 875.614 kb on + strand, within CSW01_18755at 875.622 kb on - strand, within CSW01_18755at 875.825 kb on + strand, within CSW01_18755at 875.972 kb on + strand, within CSW01_18755at 875.977 kb on + strand, within CSW01_18755at 876.104 kb on - strand, within CSW01_18755at 876.104 kb on - strand, within CSW01_18755at 876.159 kb on + strand, within CSW01_18755at 876.181 kb on + strand, within CSW01_18755at 876.240 kb on + strand, within CSW01_18755at 876.241 kb on + strand, within CSW01_18755at 876.241 kb on + strand, within CSW01_18755at 876.249 kb on - strand, within CSW01_18755at 876.272 kb on - strand, within CSW01_18755at 876.294 kb on - strandat 876.334 kb on - strandat 876.369 kb on + strandat 876.377 kb on - strandat 876.438 kb on - strandat 876.651 kb on + strandat 876.651 kb on + strandat 876.651 kb on + strandat 876.681 kb on + strandat 876.796 kb on + strandat 876.819 kb on + strandat 876.842 kb on + strandat 876.867 kb on - strandat 876.872 kb on - strandat 876.886 kb on + strandat 876.897 kb on + strandat 876.905 kb on - strandat 877.051 kb on + strandat 877.090 kb on + strandat 877.103 kb on - strandat 877.169 kb on + strand, within CSW01_18760at 877.180 kb on - strand, within CSW01_18760at 877.226 kb on - strand, within CSW01_18760at 877.238 kb on - strand, within CSW01_18760at 877.274 kb on - strand, within CSW01_18760at 877.291 kb on + strand, within CSW01_18760at 877.323 kb on + strand, within CSW01_18760at 877.323 kb on + strand, within CSW01_18760at 877.331 kb on - strand, within CSW01_18760

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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873,788 + CSW01_18750 0.57 -0.7
873,809 + CSW01_18750 0.58 +0.9
873,809 + CSW01_18750 0.58 +2.9
873,809 + CSW01_18750 0.58 -0.8
873,836 + CSW01_18750 0.60 -0.1
873,844 - CSW01_18750 0.60 -1.0
874,058 - CSW01_18750 0.72 +0.5
874,079 - CSW01_18750 0.73 -0.1
874,079 - CSW01_18750 0.73 +0.2
874,079 - CSW01_18750 0.73 +0.8
874,079 - CSW01_18750 0.73 +0.1
874,079 - CSW01_18750 0.73 -2.3
874,079 - CSW01_18750 0.73 +0.6
874,079 - CSW01_18750 0.73 -0.1
874,198 - CSW01_18750 0.79 -0.4
874,217 + CSW01_18750 0.80 -3.4
874,225 - CSW01_18750 0.81 -0.7
874,225 - CSW01_18750 0.81 -0.1
874,391 + CSW01_18750 0.89 -0.3
874,590 - -0.6
874,738 + -1.3
874,738 + +1.0
874,739 + -0.3
874,746 - -0.7
874,746 - -0.4
874,746 - -2.3
874,747 - +1.3
874,883 + CSW01_18755 0.13 +0.2
875,093 + CSW01_18755 0.24 +0.5
875,101 - CSW01_18755 0.25 -2.4
875,125 + CSW01_18755 0.26 +0.6
875,190 + CSW01_18755 0.30 -0.1
875,190 + CSW01_18755 0.30 -1.7
875,190 + CSW01_18755 0.30 -2.6
875,198 - CSW01_18755 0.30 +0.4
875,198 - CSW01_18755 0.30 -0.2
875,198 - CSW01_18755 0.30 -4.2
875,198 - CSW01_18755 0.30 -1.6
875,254 - CSW01_18755 0.33 +0.2
875,270 + CSW01_18755 0.34 -0.4
875,270 + CSW01_18755 0.34 +0.5
875,270 + CSW01_18755 0.34 -0.5
875,270 + CSW01_18755 0.34 -0.7
875,278 - CSW01_18755 0.35 +0.9
875,278 - CSW01_18755 0.35 -1.4
875,278 - CSW01_18755 0.35 +0.9
875,323 + CSW01_18755 0.37 -0.3
875,342 + CSW01_18755 0.38 +0.1
875,347 + CSW01_18755 0.38 -0.5
875,347 + CSW01_18755 0.38 +0.6
875,487 - CSW01_18755 0.46 +1.7
875,497 - CSW01_18755 0.47 +0.8
875,536 + CSW01_18755 0.49 -0.1
875,549 - CSW01_18755 0.49 -3.6
875,567 + CSW01_18755 0.50 +0.1
875,567 + CSW01_18755 0.50 +1.5
875,567 + CSW01_18755 0.50 -2.6
875,575 - CSW01_18755 0.51 +1.0
875,575 - CSW01_18755 0.51 +0.0
875,575 - CSW01_18755 0.51 -1.7
875,603 - CSW01_18755 0.52 -0.3
875,612 + CSW01_18755 0.53 +2.2
875,614 + CSW01_18755 0.53 -0.1
875,614 + CSW01_18755 0.53 +0.3
875,614 + CSW01_18755 0.53 +0.4
875,622 - CSW01_18755 0.53 -0.8
875,825 + CSW01_18755 0.65 -2.3
875,972 + CSW01_18755 0.73 +0.4
875,977 + CSW01_18755 0.73 -1.4
876,104 - CSW01_18755 0.80 +1.0
876,104 - CSW01_18755 0.80 +0.5
876,159 + CSW01_18755 0.83 -2.7
876,181 + CSW01_18755 0.84 -0.6
876,240 + CSW01_18755 0.87 -3.4
876,241 + CSW01_18755 0.88 -0.9
876,241 + CSW01_18755 0.88 +0.8
876,249 - CSW01_18755 0.88 +0.4
876,272 - CSW01_18755 0.89 -0.3
876,294 - +1.1
876,334 - +0.2
876,369 + -0.1
876,377 - -0.4
876,438 - +2.3
876,651 + +0.8
876,651 + -1.5
876,651 + +0.6
876,681 + -1.5
876,796 + +1.8
876,819 + +1.2
876,842 + -2.6
876,867 - -0.8
876,872 - -1.4
876,886 + +1.2
876,897 + -0.9
876,905 - +0.7
877,051 + -2.3
877,090 + +1.2
877,103 - +0.8
877,169 + CSW01_18760 0.14 +2.2
877,180 - CSW01_18760 0.15 -0.4
877,226 - CSW01_18760 0.19 +0.0
877,238 - CSW01_18760 0.20 +1.4
877,274 - CSW01_18760 0.24 +0.2
877,291 + CSW01_18760 0.25 +0.6
877,323 + CSW01_18760 0.28 -0.9
877,323 + CSW01_18760 0.28 +1.0
877,331 - CSW01_18760 0.29 +0.6

Or see this region's nucleotide sequence