Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18520

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18515 and CSW01_18520 are separated by 299 nucleotidesCSW01_18520 and CSW01_18525 are separated by 107 nucleotidesCSW01_18525 and CSW01_18530 are separated by 628 nucleotides CSW01_18515: CSW01_18515 - DNA-binding transcriptional regulator DsdC, at 827,653 to 828,597 _18515 CSW01_18520: CSW01_18520 - linear amide C-N hydrolase, at 828,897 to 829,973 _18520 CSW01_18525: CSW01_18525 - integrase, at 830,081 to 830,242 _18525 CSW01_18530: CSW01_18530 - hypothetical protein, at 830,871 to 831,251 _18530 Position (kb) 828 829 830Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 827.959 kb on + strand, within CSW01_18515at 827.993 kb on + strand, within CSW01_18515at 828.003 kb on + strand, within CSW01_18515at 828.011 kb on - strand, within CSW01_18515at 828.011 kb on - strand, within CSW01_18515at 828.013 kb on - strand, within CSW01_18515at 828.029 kb on + strand, within CSW01_18515at 828.037 kb on - strand, within CSW01_18515at 828.037 kb on - strand, within CSW01_18515at 828.037 kb on - strand, within CSW01_18515at 828.039 kb on + strand, within CSW01_18515at 828.047 kb on - strand, within CSW01_18515at 828.132 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.234 kb on + strand, within CSW01_18515at 828.241 kb on - strand, within CSW01_18515at 828.248 kb on - strand, within CSW01_18515at 828.249 kb on + strand, within CSW01_18515at 828.249 kb on - strand, within CSW01_18515at 828.251 kb on + strand, within CSW01_18515at 828.251 kb on + strand, within CSW01_18515at 828.259 kb on - strand, within CSW01_18515at 828.261 kb on - strand, within CSW01_18515at 828.311 kb on - strand, within CSW01_18515at 828.315 kb on + strand, within CSW01_18515at 828.320 kb on + strand, within CSW01_18515at 828.361 kb on + strand, within CSW01_18515at 828.429 kb on - strand, within CSW01_18515at 828.452 kb on + strand, within CSW01_18515at 828.458 kb on - strand, within CSW01_18515at 828.471 kb on + strand, within CSW01_18515at 828.473 kb on - strand, within CSW01_18515at 828.477 kb on + strand, within CSW01_18515at 828.477 kb on + strand, within CSW01_18515at 828.477 kb on + strand, within CSW01_18515at 828.477 kb on + strand, within CSW01_18515at 828.477 kb on + strand, within CSW01_18515at 828.477 kb on + strand, within CSW01_18515at 828.477 kb on + strand, within CSW01_18515at 828.485 kb on - strand, within CSW01_18515at 828.485 kb on - strand, within CSW01_18515at 828.485 kb on - strand, within CSW01_18515at 828.485 kb on - strand, within CSW01_18515at 828.485 kb on - strand, within CSW01_18515at 828.681 kb on - strandat 828.683 kb on + strandat 828.683 kb on + strandat 828.691 kb on + strandat 828.691 kb on - strandat 828.691 kb on - strandat 828.693 kb on + strandat 828.693 kb on + strandat 828.693 kb on + strandat 828.698 kb on + strandat 828.701 kb on - strandat 828.701 kb on - strandat 828.701 kb on - strandat 828.701 kb on - strandat 828.701 kb on - strandat 828.703 kb on + strandat 828.706 kb on - strandat 828.776 kb on + strandat 828.797 kb on + strandat 828.805 kb on - strandat 828.815 kb on + strandat 828.815 kb on + strandat 828.816 kb on + strandat 828.823 kb on - strandat 828.859 kb on + strandat 828.867 kb on + strandat 828.919 kb on - strandat 828.983 kb on - strandat 828.986 kb on + strandat 828.995 kb on - strandat 828.995 kb on - strandat 829.057 kb on + strand, within CSW01_18520at 829.058 kb on + strand, within CSW01_18520at 829.175 kb on + strand, within CSW01_18520at 829.237 kb on + strand, within CSW01_18520at 829.237 kb on + strand, within CSW01_18520at 829.273 kb on - strand, within CSW01_18520at 829.287 kb on - strand, within CSW01_18520at 829.287 kb on - strand, within CSW01_18520at 829.318 kb on - strand, within CSW01_18520at 829.332 kb on + strand, within CSW01_18520at 829.341 kb on - strand, within CSW01_18520at 829.366 kb on - strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.502 kb on + strand, within CSW01_18520at 829.502 kb on + strand, within CSW01_18520at 829.508 kb on - strand, within CSW01_18520at 829.510 kb on - strand, within CSW01_18520at 829.510 kb on - strand, within CSW01_18520at 829.517 kb on - strand, within CSW01_18520at 829.548 kb on + strand, within CSW01_18520at 829.635 kb on - strand, within CSW01_18520at 829.635 kb on - strand, within CSW01_18520at 829.650 kb on + strand, within CSW01_18520at 829.658 kb on - strand, within CSW01_18520at 829.677 kb on - strand, within CSW01_18520at 829.716 kb on + strand, within CSW01_18520at 829.724 kb on - strand, within CSW01_18520at 829.742 kb on + strand, within CSW01_18520at 829.742 kb on + strand, within CSW01_18520at 829.838 kb on + strand, within CSW01_18520at 829.893 kb on + strandat 829.906 kb on - strandat 829.940 kb on + strandat 829.971 kb on - strandat 830.040 kb on + strandat 830.106 kb on - strand, within CSW01_18525at 830.146 kb on - strand, within CSW01_18525at 830.206 kb on + strand, within CSW01_18525at 830.243 kb on - strandat 830.282 kb on + strandat 830.308 kb on - strandat 830.342 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.397 kb on + strandat 830.404 kb on - strandat 830.405 kb on - strandat 830.405 kb on - strandat 830.405 kb on - strandat 830.436 kb on - strandat 830.674 kb on + strandat 830.688 kb on + strandat 830.813 kb on + strandat 830.813 kb on + strandat 830.813 kb on + strandat 830.813 kb on + strandat 830.813 kb on + strandat 830.813 kb on + strandat 830.813 kb on + strandat 830.823 kb on + strandat 830.823 kb on + strandat 830.823 kb on + strandat 830.828 kb on + strandat 830.828 kb on + strandat 830.828 kb on + strandat 830.831 kb on - strandat 830.835 kb on - strandat 830.836 kb on - strandat 830.909 kb on - strand, within CSW01_18530at 830.919 kb on - strand, within CSW01_18530at 830.921 kb on - strand, within CSW01_18530at 830.923 kb on + strand, within CSW01_18530at 830.931 kb on - strand, within CSW01_18530at 830.963 kb on - strand, within CSW01_18530at 830.971 kb on - strand, within CSW01_18530

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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827,959 + CSW01_18515 0.32 +0.2
827,993 + CSW01_18515 0.36 -1.7
828,003 + CSW01_18515 0.37 +0.0
828,011 - CSW01_18515 0.38 +0.8
828,011 - CSW01_18515 0.38 -4.0
828,013 - CSW01_18515 0.38 +0.9
828,029 + CSW01_18515 0.40 -0.7
828,037 - CSW01_18515 0.41 -2.6
828,037 - CSW01_18515 0.41 +0.4
828,037 - CSW01_18515 0.41 -1.7
828,039 + CSW01_18515 0.41 -1.3
828,047 - CSW01_18515 0.42 -2.4
828,132 + CSW01_18515 0.51 -2.3
828,194 + CSW01_18515 0.57 -2.5
828,194 + CSW01_18515 0.57 +1.0
828,194 + CSW01_18515 0.57 -1.2
828,194 + CSW01_18515 0.57 +0.1
828,194 + CSW01_18515 0.57 +1.0
828,194 + CSW01_18515 0.57 +0.1
828,194 + CSW01_18515 0.57 +1.3
828,194 + CSW01_18515 0.57 -0.5
828,194 + CSW01_18515 0.57 -0.9
828,194 + CSW01_18515 0.57 -0.8
828,194 + CSW01_18515 0.57 +1.6
828,194 + CSW01_18515 0.57 -2.6
828,202 - CSW01_18515 0.58 +0.0
828,202 - CSW01_18515 0.58 -0.4
828,202 - CSW01_18515 0.58 -0.3
828,202 - CSW01_18515 0.58 -2.0
828,202 - CSW01_18515 0.58 +1.5
828,202 - CSW01_18515 0.58 +0.7
828,202 - CSW01_18515 0.58 -2.7
828,202 - CSW01_18515 0.58 -0.8
828,234 + CSW01_18515 0.61 -1.0
828,241 - CSW01_18515 0.62 +0.6
828,248 - CSW01_18515 0.63 -1.1
828,249 + CSW01_18515 0.63 -2.0
828,249 - CSW01_18515 0.63 +0.0
828,251 + CSW01_18515 0.63 +0.0
828,251 + CSW01_18515 0.63 +0.8
828,259 - CSW01_18515 0.64 +1.0
828,261 - CSW01_18515 0.64 -3.2
828,311 - CSW01_18515 0.70 +0.2
828,315 + CSW01_18515 0.70 -1.0
828,320 + CSW01_18515 0.71 +0.5
828,361 + CSW01_18515 0.75 -2.5
828,429 - CSW01_18515 0.82 +1.6
828,452 + CSW01_18515 0.85 -3.7
828,458 - CSW01_18515 0.85 -0.8
828,471 + CSW01_18515 0.87 +0.0
828,473 - CSW01_18515 0.87 -2.6
828,477 + CSW01_18515 0.87 -0.3
828,477 + CSW01_18515 0.87 +2.2
828,477 + CSW01_18515 0.87 -2.0
828,477 + CSW01_18515 0.87 +0.8
828,477 + CSW01_18515 0.87 +1.9
828,477 + CSW01_18515 0.87 -0.6
828,477 + CSW01_18515 0.87 +0.5
828,485 - CSW01_18515 0.88 +1.0
828,485 - CSW01_18515 0.88 -0.5
828,485 - CSW01_18515 0.88 -2.0
828,485 - CSW01_18515 0.88 -0.8
828,485 - CSW01_18515 0.88 -3.2
828,681 - -0.5
828,683 + +0.5
828,683 + -2.1
828,691 + +0.1
828,691 - +1.0
828,691 - +0.8
828,693 + -1.8
828,693 + -1.8
828,693 + +0.8
828,698 + +1.1
828,701 - -0.6
828,701 - +1.2
828,701 - +1.2
828,701 - -3.4
828,701 - -0.7
828,703 + -3.9
828,706 - +1.3
828,776 + -1.0
828,797 + -1.7
828,805 - -0.5
828,815 + +0.6
828,815 + +0.9
828,816 + -1.2
828,823 - +1.4
828,859 + +1.2
828,867 + +1.0
828,919 - -0.4
828,983 - +0.8
828,986 + +1.3
828,995 - +3.0
828,995 - +0.7
829,057 + CSW01_18520 0.15 +1.8
829,058 + CSW01_18520 0.15 +0.7
829,175 + CSW01_18520 0.26 +0.0
829,237 + CSW01_18520 0.32 +0.3
829,237 + CSW01_18520 0.32 +0.3
829,273 - CSW01_18520 0.35 -2.0
829,287 - CSW01_18520 0.36 -0.3
829,287 - CSW01_18520 0.36 -1.7
829,318 - CSW01_18520 0.39 -2.1
829,332 + CSW01_18520 0.40 +1.1
829,341 - CSW01_18520 0.41 -2.8
829,366 - CSW01_18520 0.44 +1.3
829,413 + CSW01_18520 0.48 +1.6
829,413 + CSW01_18520 0.48 -0.7
829,413 + CSW01_18520 0.48 +0.9
829,413 + CSW01_18520 0.48 -1.5
829,413 + CSW01_18520 0.48 +0.0
829,413 + CSW01_18520 0.48 -1.7
829,413 + CSW01_18520 0.48 +2.2
829,413 + CSW01_18520 0.48 -3.1
829,413 + CSW01_18520 0.48 -2.4
829,413 + CSW01_18520 0.48 -0.9
829,413 + CSW01_18520 0.48 -0.2
829,413 + CSW01_18520 0.48 -3.1
829,413 + CSW01_18520 0.48 -2.7
829,413 + CSW01_18520 0.48 +0.2
829,413 + CSW01_18520 0.48 -0.8
829,413 + CSW01_18520 0.48 +0.4
829,421 - CSW01_18520 0.49 -1.0
829,421 - CSW01_18520 0.49 +0.5
829,421 - CSW01_18520 0.49 -1.4
829,421 - CSW01_18520 0.49 +2.1
829,421 - CSW01_18520 0.49 -1.2
829,421 - CSW01_18520 0.49 +0.0
829,421 - CSW01_18520 0.49 -0.8
829,421 - CSW01_18520 0.49 -0.0
829,421 - CSW01_18520 0.49 +0.5
829,421 - CSW01_18520 0.49 +1.6
829,421 - CSW01_18520 0.49 -0.5
829,421 - CSW01_18520 0.49 +0.0
829,502 + CSW01_18520 0.56 +1.3
829,502 + CSW01_18520 0.56 +0.7
829,508 - CSW01_18520 0.57 +0.3
829,510 - CSW01_18520 0.57 +1.3
829,510 - CSW01_18520 0.57 -0.7
829,517 - CSW01_18520 0.58 -2.1
829,548 + CSW01_18520 0.60 -0.2
829,635 - CSW01_18520 0.69 +0.5
829,635 - CSW01_18520 0.69 -1.9
829,650 + CSW01_18520 0.70 +1.1
829,658 - CSW01_18520 0.71 -2.3
829,677 - CSW01_18520 0.72 +0.4
829,716 + CSW01_18520 0.76 -1.6
829,724 - CSW01_18520 0.77 -0.6
829,742 + CSW01_18520 0.78 -1.3
829,742 + CSW01_18520 0.78 -1.0
829,838 + CSW01_18520 0.87 -0.5
829,893 + +0.6
829,906 - +0.7
829,940 + -1.4
829,971 - -1.6
830,040 + -0.8
830,106 - CSW01_18525 0.15 -0.6
830,146 - CSW01_18525 0.40 -2.1
830,206 + CSW01_18525 0.77 -0.2
830,243 - +1.8
830,282 + -0.1
830,308 - -0.6
830,342 + -0.3
830,397 + -1.1
830,397 + -0.6
830,397 + +1.1
830,397 + -2.7
830,397 + +0.2
830,397 + +0.3
830,397 + +1.7
830,397 + +0.9
830,397 + +0.5
830,397 + -2.2
830,404 - +0.0
830,405 - -1.5
830,405 - -3.1
830,405 - -1.7
830,436 - +1.1
830,674 + -2.6
830,688 + +0.7
830,813 + -0.8
830,813 + -0.3
830,813 + -1.3
830,813 + +0.2
830,813 + -0.6
830,813 + -3.4
830,813 + -1.7
830,823 + +0.7
830,823 + -1.4
830,823 + -1.1
830,828 + +1.1
830,828 + -1.2
830,828 + +1.5
830,831 - +1.0
830,835 - -2.8
830,836 - -1.4
830,909 - CSW01_18530 0.10 -1.4
830,919 - CSW01_18530 0.13 +1.2
830,921 - CSW01_18530 0.13 +0.8
830,923 + CSW01_18530 0.14 +0.9
830,931 - CSW01_18530 0.16 +0.1
830,963 - CSW01_18530 0.24 -0.3
830,971 - CSW01_18530 0.26 -0.8

Or see this region's nucleotide sequence