Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18335

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18330 and CSW01_18335 are separated by 37 nucleotidesCSW01_18335 and CSW01_18340 are separated by 137 nucleotides CSW01_18330: CSW01_18330 - drug/metabolite DMT transporter permease, at 778,268 to 779,254 _18330 CSW01_18335: CSW01_18335 - sugar O-acetyltransferase, at 779,292 to 779,870 _18335 CSW01_18340: CSW01_18340 - HlyC/CorC family transporter, at 780,008 to 781,321 _18340 Position (kb) 779 780Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 778.296 kb on + strandat 778.390 kb on + strand, within CSW01_18330at 778.502 kb on + strand, within CSW01_18330at 778.567 kb on + strand, within CSW01_18330at 778.577 kb on - strand, within CSW01_18330at 778.873 kb on - strand, within CSW01_18330at 778.888 kb on - strand, within CSW01_18330at 778.894 kb on - strand, within CSW01_18330at 778.965 kb on - strand, within CSW01_18330at 778.965 kb on - strand, within CSW01_18330at 778.983 kb on + strand, within CSW01_18330at 779.001 kb on - strand, within CSW01_18330at 779.008 kb on + strand, within CSW01_18330at 779.008 kb on + strand, within CSW01_18330at 779.079 kb on + strand, within CSW01_18330at 779.079 kb on + strand, within CSW01_18330at 779.085 kb on - strand, within CSW01_18330at 779.085 kb on - strand, within CSW01_18330at 779.176 kb on + strandat 779.188 kb on + strandat 779.236 kb on + strandat 779.237 kb on - strandat 779.244 kb on - strandat 779.271 kb on - strandat 779.318 kb on + strandat 779.326 kb on - strandat 779.350 kb on + strand, within CSW01_18335at 779.522 kb on + strand, within CSW01_18335at 779.522 kb on + strand, within CSW01_18335at 779.540 kb on - strand, within CSW01_18335at 779.623 kb on - strand, within CSW01_18335at 779.726 kb on + strand, within CSW01_18335at 779.729 kb on + strand, within CSW01_18335at 779.737 kb on - strand, within CSW01_18335at 779.737 kb on - strand, within CSW01_18335at 779.739 kb on - strand, within CSW01_18335at 779.808 kb on - strand, within CSW01_18335at 779.892 kb on + strandat 779.964 kb on - strandat 780.045 kb on - strandat 780.108 kb on + strandat 780.146 kb on - strand, within CSW01_18340at 780.148 kb on + strand, within CSW01_18340at 780.156 kb on - strand, within CSW01_18340at 780.238 kb on + strand, within CSW01_18340at 780.246 kb on - strand, within CSW01_18340at 780.304 kb on + strand, within CSW01_18340at 780.322 kb on - strand, within CSW01_18340at 780.415 kb on + strand, within CSW01_18340at 780.415 kb on + strand, within CSW01_18340at 780.434 kb on + strand, within CSW01_18340at 780.441 kb on - strand, within CSW01_18340at 780.533 kb on - strand, within CSW01_18340at 780.543 kb on + strand, within CSW01_18340at 780.544 kb on - strand, within CSW01_18340at 780.545 kb on - strand, within CSW01_18340at 780.551 kb on - strand, within CSW01_18340at 780.562 kb on + strand, within CSW01_18340at 780.570 kb on - strand, within CSW01_18340at 780.645 kb on - strand, within CSW01_18340at 780.697 kb on - strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.737 kb on - strand, within CSW01_18340at 780.737 kb on - strand, within CSW01_18340at 780.737 kb on - strand, within CSW01_18340at 780.776 kb on + strand, within CSW01_18340at 780.781 kb on + strand, within CSW01_18340at 780.781 kb on + strand, within CSW01_18340at 780.794 kb on - strand, within CSW01_18340

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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778,296 + -0.4
778,390 + CSW01_18330 0.12 -1.9
778,502 + CSW01_18330 0.24 +1.5
778,567 + CSW01_18330 0.30 +0.8
778,577 - CSW01_18330 0.31 +0.7
778,873 - CSW01_18330 0.61 +0.8
778,888 - CSW01_18330 0.63 -0.4
778,894 - CSW01_18330 0.63 +0.0
778,965 - CSW01_18330 0.71 +0.4
778,965 - CSW01_18330 0.71 +0.8
778,983 + CSW01_18330 0.72 -0.3
779,001 - CSW01_18330 0.74 -1.7
779,008 + CSW01_18330 0.75 -1.8
779,008 + CSW01_18330 0.75 +1.3
779,079 + CSW01_18330 0.82 +0.4
779,079 + CSW01_18330 0.82 -0.4
779,085 - CSW01_18330 0.83 +0.5
779,085 - CSW01_18330 0.83 +0.2
779,176 + -3.5
779,188 + -2.2
779,236 + +0.3
779,237 - +3.0
779,244 - -0.2
779,271 - +1.6
779,318 + +1.2
779,326 - +1.3
779,350 + CSW01_18335 0.10 -3.6
779,522 + CSW01_18335 0.40 +0.3
779,522 + CSW01_18335 0.40 -2.9
779,540 - CSW01_18335 0.43 -0.4
779,623 - CSW01_18335 0.57 -2.7
779,726 + CSW01_18335 0.75 -0.4
779,729 + CSW01_18335 0.75 -0.1
779,737 - CSW01_18335 0.77 -0.8
779,737 - CSW01_18335 0.77 -2.7
779,739 - CSW01_18335 0.77 +0.6
779,808 - CSW01_18335 0.89 +0.7
779,892 + -2.7
779,964 - +2.7
780,045 - +0.8
780,108 + +0.4
780,146 - CSW01_18340 0.11 -0.3
780,148 + CSW01_18340 0.11 -1.0
780,156 - CSW01_18340 0.11 -0.3
780,238 + CSW01_18340 0.18 -0.8
780,246 - CSW01_18340 0.18 +0.8
780,304 + CSW01_18340 0.23 +1.6
780,322 - CSW01_18340 0.24 -1.6
780,415 + CSW01_18340 0.31 -2.1
780,415 + CSW01_18340 0.31 -2.7
780,434 + CSW01_18340 0.32 -2.7
780,441 - CSW01_18340 0.33 +0.0
780,533 - CSW01_18340 0.40 -2.2
780,543 + CSW01_18340 0.41 +0.8
780,544 - CSW01_18340 0.41 +0.3
780,545 - CSW01_18340 0.41 +2.3
780,551 - CSW01_18340 0.41 +0.7
780,562 + CSW01_18340 0.42 -0.3
780,570 - CSW01_18340 0.43 -0.1
780,645 - CSW01_18340 0.48 +0.5
780,697 - CSW01_18340 0.52 +0.2
780,729 + CSW01_18340 0.55 +2.0
780,729 + CSW01_18340 0.55 +0.6
780,729 + CSW01_18340 0.55 -2.4
780,729 + CSW01_18340 0.55 -0.3
780,729 + CSW01_18340 0.55 +0.2
780,737 - CSW01_18340 0.55 -0.5
780,737 - CSW01_18340 0.55 +0.3
780,737 - CSW01_18340 0.55 -2.4
780,776 + CSW01_18340 0.58 +2.0
780,781 + CSW01_18340 0.59 -1.8
780,781 + CSW01_18340 0.59 +1.3
780,794 - CSW01_18340 0.60 +0.7

Or see this region's nucleotide sequence