Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18325

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18320 and CSW01_18325 are separated by 136 nucleotidesCSW01_18325 and CSW01_18330 are separated by 31 nucleotides CSW01_18320: CSW01_18320 - LysR family transcriptional regulator, at 776,268 to 777,146 _18320 CSW01_18325: CSW01_18325 - cation transporter, at 777,283 to 778,236 _18325 CSW01_18330: CSW01_18330 - drug/metabolite DMT transporter permease, at 778,268 to 779,254 _18330 Position (kb) 777 778 779Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 776.313 kb on + strandat 776.329 kb on - strandat 776.408 kb on + strand, within CSW01_18320at 776.408 kb on + strand, within CSW01_18320at 776.408 kb on + strand, within CSW01_18320at 776.428 kb on + strand, within CSW01_18320at 776.436 kb on - strand, within CSW01_18320at 776.436 kb on - strand, within CSW01_18320at 776.551 kb on - strand, within CSW01_18320at 776.648 kb on - strand, within CSW01_18320at 776.779 kb on + strand, within CSW01_18320at 776.779 kb on + strand, within CSW01_18320at 776.779 kb on + strand, within CSW01_18320at 776.891 kb on + strand, within CSW01_18320at 776.891 kb on + strand, within CSW01_18320at 776.941 kb on + strand, within CSW01_18320at 777.065 kb on + strandat 777.112 kb on + strandat 777.112 kb on + strandat 777.112 kb on + strandat 777.112 kb on + strandat 777.112 kb on + strandat 777.112 kb on + strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.120 kb on - strandat 777.127 kb on - strandat 777.553 kb on + strand, within CSW01_18325at 777.576 kb on - strand, within CSW01_18325at 777.577 kb on + strand, within CSW01_18325at 777.577 kb on + strand, within CSW01_18325at 777.606 kb on - strand, within CSW01_18325at 777.635 kb on + strand, within CSW01_18325at 777.652 kb on + strand, within CSW01_18325at 777.654 kb on + strand, within CSW01_18325at 777.655 kb on - strand, within CSW01_18325at 777.662 kb on - strand, within CSW01_18325at 777.662 kb on - strand, within CSW01_18325at 777.813 kb on - strand, within CSW01_18325at 777.863 kb on + strand, within CSW01_18325at 777.863 kb on + strand, within CSW01_18325at 777.863 kb on + strand, within CSW01_18325at 777.863 kb on + strand, within CSW01_18325at 777.871 kb on - strand, within CSW01_18325at 777.871 kb on - strand, within CSW01_18325at 777.871 kb on - strand, within CSW01_18325at 777.871 kb on - strand, within CSW01_18325at 777.889 kb on + strand, within CSW01_18325at 777.967 kb on - strand, within CSW01_18325at 777.988 kb on + strand, within CSW01_18325at 778.015 kb on + strand, within CSW01_18325at 778.033 kb on - strand, within CSW01_18325at 778.033 kb on - strand, within CSW01_18325at 778.033 kb on - strand, within CSW01_18325at 778.088 kb on + strand, within CSW01_18325at 778.177 kb on + strandat 778.296 kb on + strandat 778.390 kb on + strand, within CSW01_18330at 778.502 kb on + strand, within CSW01_18330at 778.567 kb on + strand, within CSW01_18330at 778.577 kb on - strand, within CSW01_18330at 778.873 kb on - strand, within CSW01_18330at 778.888 kb on - strand, within CSW01_18330at 778.894 kb on - strand, within CSW01_18330at 778.965 kb on - strand, within CSW01_18330at 778.965 kb on - strand, within CSW01_18330at 778.983 kb on + strand, within CSW01_18330at 779.001 kb on - strand, within CSW01_18330at 779.008 kb on + strand, within CSW01_18330at 779.008 kb on + strand, within CSW01_18330at 779.079 kb on + strand, within CSW01_18330at 779.079 kb on + strand, within CSW01_18330at 779.085 kb on - strand, within CSW01_18330at 779.085 kb on - strand, within CSW01_18330at 779.176 kb on + strandat 779.188 kb on + strandat 779.236 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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776,313 + -0.4
776,329 - +0.3
776,408 + CSW01_18320 0.16 -1.6
776,408 + CSW01_18320 0.16 -3.6
776,408 + CSW01_18320 0.16 +1.6
776,428 + CSW01_18320 0.18 -1.4
776,436 - CSW01_18320 0.19 +2.2
776,436 - CSW01_18320 0.19 +0.1
776,551 - CSW01_18320 0.32 -1.1
776,648 - CSW01_18320 0.43 -0.1
776,779 + CSW01_18320 0.58 +0.6
776,779 + CSW01_18320 0.58 +0.7
776,779 + CSW01_18320 0.58 +1.1
776,891 + CSW01_18320 0.71 -0.0
776,891 + CSW01_18320 0.71 +0.8
776,941 + CSW01_18320 0.77 +1.8
777,065 + +0.4
777,112 + -0.1
777,112 + +1.1
777,112 + +0.7
777,112 + -1.0
777,112 + -3.7
777,112 + -0.4
777,120 - +0.9
777,120 - -1.7
777,120 - -0.4
777,120 - -0.8
777,120 - -2.0
777,120 - +1.5
777,120 - -1.5
777,120 - +0.7
777,120 - -0.0
777,127 - +1.1
777,553 + CSW01_18325 0.28 -0.9
777,576 - CSW01_18325 0.31 -0.9
777,577 + CSW01_18325 0.31 -1.4
777,577 + CSW01_18325 0.31 +0.4
777,606 - CSW01_18325 0.34 -0.6
777,635 + CSW01_18325 0.37 +2.2
777,652 + CSW01_18325 0.39 +1.0
777,654 + CSW01_18325 0.39 -1.1
777,655 - CSW01_18325 0.39 +0.2
777,662 - CSW01_18325 0.40 +1.2
777,662 - CSW01_18325 0.40 -0.5
777,813 - CSW01_18325 0.56 +0.7
777,863 + CSW01_18325 0.61 -2.5
777,863 + CSW01_18325 0.61 +0.8
777,863 + CSW01_18325 0.61 -0.1
777,863 + CSW01_18325 0.61 -2.7
777,871 - CSW01_18325 0.62 -0.6
777,871 - CSW01_18325 0.62 -3.3
777,871 - CSW01_18325 0.62 -0.5
777,871 - CSW01_18325 0.62 -0.4
777,889 + CSW01_18325 0.64 -1.4
777,967 - CSW01_18325 0.72 +0.3
777,988 + CSW01_18325 0.74 -2.7
778,015 + CSW01_18325 0.77 +0.6
778,033 - CSW01_18325 0.79 +1.1
778,033 - CSW01_18325 0.79 -1.5
778,033 - CSW01_18325 0.79 -0.3
778,088 + CSW01_18325 0.84 +0.1
778,177 + -0.6
778,296 + -0.4
778,390 + CSW01_18330 0.12 -1.9
778,502 + CSW01_18330 0.24 +1.5
778,567 + CSW01_18330 0.30 +0.8
778,577 - CSW01_18330 0.31 +0.7
778,873 - CSW01_18330 0.61 +0.8
778,888 - CSW01_18330 0.63 -0.4
778,894 - CSW01_18330 0.63 +0.0
778,965 - CSW01_18330 0.71 +0.4
778,965 - CSW01_18330 0.71 +0.8
778,983 + CSW01_18330 0.72 -0.3
779,001 - CSW01_18330 0.74 -1.7
779,008 + CSW01_18330 0.75 -1.8
779,008 + CSW01_18330 0.75 +1.3
779,079 + CSW01_18330 0.82 +0.4
779,079 + CSW01_18330 0.82 -0.4
779,085 - CSW01_18330 0.83 +0.5
779,085 - CSW01_18330 0.83 +0.2
779,176 + -3.5
779,188 + -2.2
779,236 + +0.3

Or see this region's nucleotide sequence