Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17995

Experiment: ICP3_phage_411_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17990 and CSW01_17995 are separated by 8 nucleotidesCSW01_17995 and CSW01_18000 are separated by 309 nucleotidesCSW01_18000 and CSW01_18005 overlap by 16 nucleotides CSW01_17990: CSW01_17990 - ATPase RavA stimulator ViaA, at 703,263 to 704,708 _17990 CSW01_17995: CSW01_17995 - DUF3763 domain-containing protein, at 704,717 to 706,375 _17995 CSW01_18000: CSW01_18000 - NUDIX hydrolase, at 706,685 to 707,242 _18000 CSW01_18005: CSW01_18005 - low-specificity L-threonine aldolase, at 707,227 to 708,258 _18005 Position (kb) 704 705 706 707Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 703.802 kb on + strand, within CSW01_17990at 703.961 kb on - strand, within CSW01_17990at 704.065 kb on - strand, within CSW01_17990at 704.117 kb on - strand, within CSW01_17990at 704.316 kb on - strand, within CSW01_17990at 704.387 kb on + strand, within CSW01_17990at 704.397 kb on - strand, within CSW01_17990at 704.414 kb on - strand, within CSW01_17990at 704.494 kb on - strand, within CSW01_17990at 704.494 kb on - strand, within CSW01_17990at 704.512 kb on + strand, within CSW01_17990at 704.520 kb on - strand, within CSW01_17990at 704.528 kb on - strand, within CSW01_17990at 704.586 kb on - strandat 704.586 kb on - strandat 704.612 kb on + strandat 704.915 kb on - strand, within CSW01_17995at 704.915 kb on - strand, within CSW01_17995at 704.932 kb on - strand, within CSW01_17995at 704.973 kb on - strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.092 kb on + strand, within CSW01_17995at 705.100 kb on - strand, within CSW01_17995at 705.100 kb on - strand, within CSW01_17995at 705.100 kb on - strand, within CSW01_17995at 705.100 kb on - strand, within CSW01_17995at 705.100 kb on - strand, within CSW01_17995at 705.100 kb on - strand, within CSW01_17995at 705.170 kb on + strand, within CSW01_17995at 705.339 kb on + strand, within CSW01_17995at 705.349 kb on - strand, within CSW01_17995at 705.375 kb on - strand, within CSW01_17995at 705.409 kb on + strand, within CSW01_17995at 705.417 kb on + strand, within CSW01_17995at 705.417 kb on + strand, within CSW01_17995at 705.425 kb on - strand, within CSW01_17995at 705.435 kb on - strand, within CSW01_17995at 705.474 kb on - strand, within CSW01_17995at 705.474 kb on - strand, within CSW01_17995at 705.488 kb on + strand, within CSW01_17995at 705.622 kb on + strand, within CSW01_17995at 705.653 kb on - strand, within CSW01_17995at 705.685 kb on + strand, within CSW01_17995at 705.693 kb on - strand, within CSW01_17995at 705.737 kb on + strand, within CSW01_17995at 705.845 kb on + strand, within CSW01_17995at 705.853 kb on - strand, within CSW01_17995at 705.877 kb on - strand, within CSW01_17995at 705.877 kb on - strand, within CSW01_17995at 705.975 kb on + strand, within CSW01_17995at 705.975 kb on + strand, within CSW01_17995at 705.983 kb on - strand, within CSW01_17995at 706.280 kb on + strandat 706.302 kb on + strandat 706.346 kb on - strandat 706.348 kb on + strandat 706.348 kb on + strandat 706.356 kb on - strandat 706.356 kb on - strandat 706.356 kb on - strandat 706.356 kb on - strandat 706.404 kb on - strandat 706.546 kb on + strandat 706.681 kb on - strandat 706.684 kb on + strandat 706.765 kb on + strand, within CSW01_18000at 706.810 kb on - strand, within CSW01_18000at 706.937 kb on + strand, within CSW01_18000at 706.940 kb on - strand, within CSW01_18000at 706.952 kb on + strand, within CSW01_18000at 706.967 kb on - strand, within CSW01_18000at 707.220 kb on - strandat 707.314 kb on + strandat 707.360 kb on + strand, within CSW01_18005

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
remove
703,802 + CSW01_17990 0.37 +0.7
703,961 - CSW01_17990 0.48 -0.6
704,065 - CSW01_17990 0.55 -1.8
704,117 - CSW01_17990 0.59 +0.8
704,316 - CSW01_17990 0.73 +0.1
704,387 + CSW01_17990 0.78 -2.4
704,397 - CSW01_17990 0.78 -0.1
704,414 - CSW01_17990 0.80 +1.8
704,494 - CSW01_17990 0.85 -2.3
704,494 - CSW01_17990 0.85 +1.4
704,512 + CSW01_17990 0.86 -1.0
704,520 - CSW01_17990 0.87 +1.3
704,528 - CSW01_17990 0.87 -1.8
704,586 - -1.7
704,586 - +1.6
704,612 + +3.1
704,915 - CSW01_17995 0.12 +1.6
704,915 - CSW01_17995 0.12 -1.7
704,932 - CSW01_17995 0.13 -0.8
704,973 - CSW01_17995 0.15 +0.2
705,092 + CSW01_17995 0.23 +1.8
705,092 + CSW01_17995 0.23 +0.4
705,092 + CSW01_17995 0.23 +0.5
705,092 + CSW01_17995 0.23 -0.4
705,092 + CSW01_17995 0.23 +1.4
705,092 + CSW01_17995 0.23 -0.3
705,092 + CSW01_17995 0.23 -0.6
705,092 + CSW01_17995 0.23 +1.5
705,100 - CSW01_17995 0.23 +1.2
705,100 - CSW01_17995 0.23 +1.6
705,100 - CSW01_17995 0.23 +0.3
705,100 - CSW01_17995 0.23 +1.3
705,100 - CSW01_17995 0.23 -2.8
705,100 - CSW01_17995 0.23 -2.1
705,170 + CSW01_17995 0.27 -0.9
705,339 + CSW01_17995 0.37 +0.3
705,349 - CSW01_17995 0.38 +2.4
705,375 - CSW01_17995 0.40 -2.9
705,409 + CSW01_17995 0.42 +2.4
705,417 + CSW01_17995 0.42 -1.4
705,417 + CSW01_17995 0.42 +1.6
705,425 - CSW01_17995 0.43 +1.8
705,435 - CSW01_17995 0.43 -0.3
705,474 - CSW01_17995 0.46 -1.6
705,474 - CSW01_17995 0.46 +1.3
705,488 + CSW01_17995 0.46 +0.9
705,622 + CSW01_17995 0.55 -0.1
705,653 - CSW01_17995 0.56 +1.0
705,685 + CSW01_17995 0.58 +1.7
705,693 - CSW01_17995 0.59 +0.3
705,737 + CSW01_17995 0.61 -1.0
705,845 + CSW01_17995 0.68 -0.6
705,853 - CSW01_17995 0.68 -1.9
705,877 - CSW01_17995 0.70 +0.7
705,877 - CSW01_17995 0.70 -1.0
705,975 + CSW01_17995 0.76 -3.2
705,975 + CSW01_17995 0.76 -0.4
705,983 - CSW01_17995 0.76 -0.7
706,280 + -0.3
706,302 + -0.8
706,346 - -1.4
706,348 + -0.7
706,348 + -0.1
706,356 - -1.8
706,356 - +1.2
706,356 - +1.9
706,356 - -0.6
706,404 - +2.3
706,546 + +0.2
706,681 - +0.0
706,684 + +1.1
706,765 + CSW01_18000 0.14 -0.6
706,810 - CSW01_18000 0.22 +0.4
706,937 + CSW01_18000 0.45 -0.5
706,940 - CSW01_18000 0.46 +0.4
706,952 + CSW01_18000 0.48 -0.5
706,967 - CSW01_18000 0.51 +1.1
707,220 - -0.1
707,314 + +0.9
707,360 + CSW01_18005 0.13 -1.4

Or see this region's nucleotide sequence