Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17935 and CSW01_17940 are separated by 84 nucleotides CSW01_17940 and CSW01_17945 are separated by 32 nucleotides CSW01_17945 and CSW01_17950 are separated by 24 nucleotides CSW01_17950 and CSW01_17955 are separated by 217 nucleotides
CSW01_17935: CSW01_17935 - MFS transporter, at 695,644 to 696,798
_17935
CSW01_17940: CSW01_17940 - lipase, at 696,883 to 697,713
_17940
CSW01_17945: CSW01_17945 - tRNA-Cys, at 697,746 to 697,819
_17945
CSW01_17950: CSW01_17950 - tRNA-Leu, at 697,844 to 697,930
_17950
CSW01_17955: CSW01_17955 - lactoylglutathione lyase family protein, at 698,148 to 698,648
_17955
Position (kb) 696
697
698 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 695.920 kb on + strand, within CSW01_17935 at 696.022 kb on + strand, within CSW01_17935 at 696.066 kb on - strand, within CSW01_17935 at 696.074 kb on - strand, within CSW01_17935 at 696.116 kb on - strand, within CSW01_17935 at 696.143 kb on + strand, within CSW01_17935 at 696.150 kb on + strand, within CSW01_17935 at 696.169 kb on + strand, within CSW01_17935 at 696.169 kb on + strand, within CSW01_17935 at 696.169 kb on + strand, within CSW01_17935 at 696.185 kb on + strand, within CSW01_17935 at 696.203 kb on - strand, within CSW01_17935 at 696.218 kb on - strand, within CSW01_17935 at 696.218 kb on - strand, within CSW01_17935 at 696.352 kb on - strand, within CSW01_17935 at 696.402 kb on - strand, within CSW01_17935 at 696.447 kb on - strand, within CSW01_17935 at 696.518 kb on + strand, within CSW01_17935 at 696.670 kb on - strand, within CSW01_17935 at 696.688 kb on - strand at 696.807 kb on - strand at 696.837 kb on - strand at 696.964 kb on + strand at 697.000 kb on - strand, within CSW01_17940 at 697.035 kb on + strand, within CSW01_17940 at 697.117 kb on + strand, within CSW01_17940 at 697.125 kb on - strand, within CSW01_17940 at 697.135 kb on - strand, within CSW01_17940 at 697.141 kb on + strand, within CSW01_17940 at 697.141 kb on + strand, within CSW01_17940 at 697.164 kb on - strand, within CSW01_17940 at 697.215 kb on - strand, within CSW01_17940 at 697.318 kb on + strand, within CSW01_17940 at 697.424 kb on + strand, within CSW01_17940 at 697.454 kb on - strand, within CSW01_17940 at 697.504 kb on + strand, within CSW01_17940 at 697.504 kb on + strand, within CSW01_17940 at 697.828 kb on + strand at 697.832 kb on + strand at 697.851 kb on - strand at 697.968 kb on - strand at 698.114 kb on - strand at 698.167 kb on + strand at 698.175 kb on - strand at 698.175 kb on - strand at 698.185 kb on - strand at 698.278 kb on + strand, within CSW01_17955 at 698.489 kb on + strand, within CSW01_17955 at 698.502 kb on - strand, within CSW01_17955 at 698.524 kb on + strand, within CSW01_17955 at 698.524 kb on + strand, within CSW01_17955 at 698.567 kb on - strand, within CSW01_17955 at 698.580 kb on - strand, within CSW01_17955 at 698.580 kb on - strand, within CSW01_17955 at 698.636 kb on + strand at 698.644 kb on - strand at 698.678 kb on + strand at 698.697 kb on + strand at 698.705 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 695,920 + CSW01_17935 0.24 -0.3 696,022 + CSW01_17935 0.33 -0.2 696,066 - CSW01_17935 0.37 -2.4 696,074 - CSW01_17935 0.37 -1.6 696,116 - CSW01_17935 0.41 -1.1 696,143 + CSW01_17935 0.43 -0.0 696,150 + CSW01_17935 0.44 -2.3 696,169 + CSW01_17935 0.45 -0.3 696,169 + CSW01_17935 0.45 -0.1 696,169 + CSW01_17935 0.45 -2.2 696,185 + CSW01_17935 0.47 -3.3 696,203 - CSW01_17935 0.48 +0.9 696,218 - CSW01_17935 0.50 -0.1 696,218 - CSW01_17935 0.50 -0.6 696,352 - CSW01_17935 0.61 -1.1 696,402 - CSW01_17935 0.66 +0.5 696,447 - CSW01_17935 0.70 -1.9 696,518 + CSW01_17935 0.76 +0.3 696,670 - CSW01_17935 0.89 +1.3 696,688 - +1.6 696,807 - -2.0 696,837 - -2.9 696,964 + +1.9 697,000 - CSW01_17940 0.14 -0.2 697,035 + CSW01_17940 0.18 +0.9 697,117 + CSW01_17940 0.28 -3.0 697,125 - CSW01_17940 0.29 -2.3 697,135 - CSW01_17940 0.30 +0.3 697,141 + CSW01_17940 0.31 +1.4 697,141 + CSW01_17940 0.31 -0.2 697,164 - CSW01_17940 0.34 -0.5 697,215 - CSW01_17940 0.40 -2.5 697,318 + CSW01_17940 0.52 +1.2 697,424 + CSW01_17940 0.65 -1.2 697,454 - CSW01_17940 0.69 +1.7 697,504 + CSW01_17940 0.75 +0.9 697,504 + CSW01_17940 0.75 -1.6 697,828 + -0.5 697,832 + -2.2 697,851 - +1.0 697,968 - -2.6 698,114 - -1.8 698,167 + -0.8 698,175 - +0.0 698,175 - +2.9 698,185 - +0.3 698,278 + CSW01_17955 0.26 +0.8 698,489 + CSW01_17955 0.68 +1.5 698,502 - CSW01_17955 0.71 -0.0 698,524 + CSW01_17955 0.75 -0.6 698,524 + CSW01_17955 0.75 +1.0 698,567 - CSW01_17955 0.84 +0.1 698,580 - CSW01_17955 0.86 +0.5 698,580 - CSW01_17955 0.86 -0.1 698,636 + +0.7 698,644 - +0.2 698,678 + +0.4 698,697 + +0.1 698,705 - +0.7
Or see this region's nucleotide sequence