Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17645 and CSW01_17650 are separated by 12 nucleotides CSW01_17650 and CSW01_17655 are separated by 670 nucleotides
CSW01_17645: CSW01_17645 - acetyl-CoA C-acetyltransferase, at 626,285 to 627,490
_17645
CSW01_17650: CSW01_17650 - beta-ketoacyl-ACP reductase, at 627,503 to 628,243
_17650
CSW01_17655: CSW01_17655 - protein translocase subunit SecF, at 628,914 to 629,816
_17655
Position (kb) 627
628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 626.629 kb on - strand, within CSW01_17645 at 626.630 kb on - strand, within CSW01_17645 at 626.684 kb on - strand, within CSW01_17645 at 626.798 kb on + strand, within CSW01_17645 at 626.806 kb on - strand, within CSW01_17645 at 626.834 kb on + strand, within CSW01_17645 at 626.844 kb on - strand, within CSW01_17645 at 626.981 kb on + strand, within CSW01_17645 at 627.015 kb on + strand, within CSW01_17645 at 627.188 kb on - strand, within CSW01_17645 at 627.230 kb on - strand, within CSW01_17645 at 627.230 kb on - strand, within CSW01_17645 at 627.260 kb on - strand, within CSW01_17645 at 627.308 kb on - strand, within CSW01_17645 at 627.308 kb on - strand, within CSW01_17645 at 627.308 kb on - strand, within CSW01_17645 at 627.310 kb on + strand, within CSW01_17645 at 627.310 kb on + strand, within CSW01_17645 at 627.365 kb on - strand, within CSW01_17645 at 627.365 kb on - strand, within CSW01_17645 at 627.430 kb on - strand at 627.435 kb on + strand at 627.496 kb on + strand at 627.554 kb on - strand at 627.608 kb on + strand, within CSW01_17650 at 627.685 kb on + strand, within CSW01_17650 at 627.693 kb on - strand, within CSW01_17650 at 627.693 kb on - strand, within CSW01_17650 at 627.704 kb on - strand, within CSW01_17650 at 627.740 kb on + strand, within CSW01_17650 at 627.853 kb on - strand, within CSW01_17650 at 627.887 kb on - strand, within CSW01_17650 at 627.891 kb on - strand, within CSW01_17650 at 627.908 kb on - strand, within CSW01_17650 at 627.923 kb on - strand, within CSW01_17650 at 628.066 kb on + strand, within CSW01_17650 at 628.074 kb on - strand, within CSW01_17650 at 628.074 kb on - strand, within CSW01_17650 at 628.122 kb on - strand, within CSW01_17650 at 628.125 kb on + strand, within CSW01_17650 at 628.178 kb on - strand at 628.198 kb on + strand at 628.249 kb on + strand at 628.250 kb on - strand at 628.282 kb on - strand at 628.290 kb on + strand at 628.290 kb on + strand at 628.290 kb on + strand at 628.292 kb on + strand at 628.298 kb on - strand at 628.298 kb on - strand at 628.310 kb on - strand at 628.315 kb on - strand at 628.325 kb on + strand at 628.330 kb on - strand at 628.330 kb on - strand at 628.670 kb on + strand at 628.689 kb on + strand at 628.716 kb on + strand at 628.724 kb on - strand at 628.724 kb on - strand at 628.893 kb on + strand at 628.947 kb on - strand at 628.950 kb on - strand at 628.955 kb on - strand at 628.956 kb on + strand at 628.975 kb on + strand at 628.979 kb on + strand at 628.980 kb on + strand at 628.982 kb on - strand at 628.984 kb on + strand at 629.062 kb on - strand, within CSW01_17655 at 629.122 kb on + strand, within CSW01_17655 at 629.195 kb on - strand, within CSW01_17655
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 626,629 - CSW01_17645 0.29 -2.8 626,630 - CSW01_17645 0.29 +0.2 626,684 - CSW01_17645 0.33 +0.2 626,798 + CSW01_17645 0.43 +1.6 626,806 - CSW01_17645 0.43 +0.2 626,834 + CSW01_17645 0.46 +1.1 626,844 - CSW01_17645 0.46 -1.0 626,981 + CSW01_17645 0.58 -3.0 627,015 + CSW01_17645 0.61 -1.9 627,188 - CSW01_17645 0.75 +0.6 627,230 - CSW01_17645 0.78 +2.6 627,230 - CSW01_17645 0.78 +0.9 627,260 - CSW01_17645 0.81 -1.3 627,308 - CSW01_17645 0.85 -2.2 627,308 - CSW01_17645 0.85 -1.2 627,308 - CSW01_17645 0.85 -2.2 627,310 + CSW01_17645 0.85 +0.4 627,310 + CSW01_17645 0.85 -1.7 627,365 - CSW01_17645 0.90 -0.1 627,365 - CSW01_17645 0.90 -0.5 627,430 - -1.9 627,435 + +0.0 627,496 + -1.2 627,554 - +0.7 627,608 + CSW01_17650 0.14 +0.4 627,685 + CSW01_17650 0.25 +0.5 627,693 - CSW01_17650 0.26 -0.8 627,693 - CSW01_17650 0.26 -1.1 627,704 - CSW01_17650 0.27 +0.2 627,740 + CSW01_17650 0.32 -0.3 627,853 - CSW01_17650 0.47 +0.3 627,887 - CSW01_17650 0.52 -0.4 627,891 - CSW01_17650 0.52 -1.7 627,908 - CSW01_17650 0.55 -3.2 627,923 - CSW01_17650 0.57 +1.0 628,066 + CSW01_17650 0.76 -1.9 628,074 - CSW01_17650 0.77 -0.1 628,074 - CSW01_17650 0.77 -1.8 628,122 - CSW01_17650 0.84 -0.3 628,125 + CSW01_17650 0.84 -0.7 628,178 - -0.6 628,198 + +0.4 628,249 + -2.4 628,250 - -2.1 628,282 - +0.5 628,290 + -1.6 628,290 + -1.5 628,290 + +0.2 628,292 + +0.2 628,298 - +0.6 628,298 - -0.3 628,310 - +0.3 628,315 - -0.1 628,325 + +0.2 628,330 - +0.8 628,330 - -1.2 628,670 + +0.6 628,689 + -2.7 628,716 + +0.1 628,724 - -2.2 628,724 - -1.2 628,893 + +0.2 628,947 - -1.6 628,950 - -1.5 628,955 - -1.1 628,956 + +2.3 628,975 + +0.4 628,979 + +1.3 628,980 + +0.8 628,982 - +0.2 628,984 + +1.1 629,062 - CSW01_17655 0.16 -1.0 629,122 + CSW01_17655 0.23 -2.8 629,195 - CSW01_17655 0.31 -3.5
Or see this region's nucleotide sequence