Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17635 and CSW01_17640 are separated by 57 nucleotides CSW01_17640 and CSW01_17645 are separated by 29 nucleotides
CSW01_17635: CSW01_17635 - class I poly(R)-hydroxyalkanoic acid synthase, at 624,075 to 625,850
_17635
CSW01_17640: CSW01_17640 - phasin family protein, at 625,908 to 626,255
_17640
CSW01_17645: CSW01_17645 - acetyl-CoA C-acetyltransferase, at 626,285 to 627,490
_17645
Position (kb) 625
626
627 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 624.917 kb on - strand, within CSW01_17635 at 625.001 kb on - strand, within CSW01_17635 at 625.026 kb on + strand, within CSW01_17635 at 625.034 kb on - strand, within CSW01_17635 at 625.036 kb on + strand, within CSW01_17635 at 625.048 kb on - strand, within CSW01_17635 at 625.062 kb on - strand, within CSW01_17635 at 625.155 kb on - strand, within CSW01_17635 at 625.160 kb on - strand, within CSW01_17635 at 625.231 kb on - strand, within CSW01_17635 at 625.356 kb on + strand, within CSW01_17635 at 625.366 kb on + strand, within CSW01_17635 at 625.497 kb on - strand, within CSW01_17635 at 625.553 kb on - strand, within CSW01_17635 at 625.746 kb on - strand at 625.765 kb on + strand at 625.773 kb on + strand at 625.773 kb on - strand at 625.783 kb on - strand at 625.825 kb on - strand at 625.905 kb on + strand at 625.905 kb on + strand at 625.924 kb on + strand at 625.924 kb on + strand at 625.924 kb on + strand at 625.924 kb on + strand at 625.932 kb on - strand at 625.960 kb on + strand, within CSW01_17640 at 626.042 kb on + strand, within CSW01_17640 at 626.092 kb on + strand, within CSW01_17640 at 626.092 kb on + strand, within CSW01_17640 at 626.092 kb on + strand, within CSW01_17640 at 626.100 kb on - strand, within CSW01_17640 at 626.100 kb on - strand, within CSW01_17640 at 626.125 kb on + strand, within CSW01_17640 at 626.142 kb on - strand, within CSW01_17640 at 626.201 kb on + strand, within CSW01_17640 at 626.320 kb on - strand at 626.333 kb on + strand at 626.431 kb on - strand, within CSW01_17645 at 626.431 kb on - strand, within CSW01_17645 at 626.431 kb on - strand, within CSW01_17645 at 626.431 kb on - strand, within CSW01_17645 at 626.450 kb on - strand, within CSW01_17645 at 626.450 kb on - strand, within CSW01_17645 at 626.496 kb on + strand, within CSW01_17645 at 626.629 kb on - strand, within CSW01_17645 at 626.630 kb on - strand, within CSW01_17645 at 626.684 kb on - strand, within CSW01_17645 at 626.798 kb on + strand, within CSW01_17645 at 626.806 kb on - strand, within CSW01_17645 at 626.834 kb on + strand, within CSW01_17645 at 626.844 kb on - strand, within CSW01_17645 at 626.981 kb on + strand, within CSW01_17645 at 627.015 kb on + strand, within CSW01_17645 at 627.188 kb on - strand, within CSW01_17645 at 627.230 kb on - strand, within CSW01_17645 at 627.230 kb on - strand, within CSW01_17645
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 624,917 - CSW01_17635 0.47 -0.1 625,001 - CSW01_17635 0.52 -1.6 625,026 + CSW01_17635 0.54 +0.9 625,034 - CSW01_17635 0.54 +0.5 625,036 + CSW01_17635 0.54 -2.6 625,048 - CSW01_17635 0.55 +2.5 625,062 - CSW01_17635 0.56 -2.2 625,155 - CSW01_17635 0.61 -2.9 625,160 - CSW01_17635 0.61 +0.8 625,231 - CSW01_17635 0.65 +0.9 625,356 + CSW01_17635 0.72 -0.0 625,366 + CSW01_17635 0.73 +0.3 625,497 - CSW01_17635 0.80 +1.1 625,553 - CSW01_17635 0.83 -0.7 625,746 - +0.1 625,765 + +0.7 625,773 + -0.7 625,773 - +0.1 625,783 - +1.2 625,825 - -1.3 625,905 + +0.3 625,905 + -1.1 625,924 + -0.2 625,924 + -0.1 625,924 + +0.4 625,924 + -2.3 625,932 - -0.8 625,960 + CSW01_17640 0.15 +0.7 626,042 + CSW01_17640 0.39 -1.5 626,092 + CSW01_17640 0.53 +1.4 626,092 + CSW01_17640 0.53 -2.1 626,092 + CSW01_17640 0.53 -0.1 626,100 - CSW01_17640 0.55 -0.1 626,100 - CSW01_17640 0.55 +0.4 626,125 + CSW01_17640 0.62 +0.1 626,142 - CSW01_17640 0.67 +1.0 626,201 + CSW01_17640 0.84 +0.3 626,320 - +0.1 626,333 + +1.8 626,431 - CSW01_17645 0.12 +0.0 626,431 - CSW01_17645 0.12 +1.2 626,431 - CSW01_17645 0.12 +0.4 626,431 - CSW01_17645 0.12 +0.9 626,450 - CSW01_17645 0.14 +0.3 626,450 - CSW01_17645 0.14 +0.7 626,496 + CSW01_17645 0.17 +0.6 626,629 - CSW01_17645 0.29 -2.8 626,630 - CSW01_17645 0.29 +0.2 626,684 - CSW01_17645 0.33 +0.2 626,798 + CSW01_17645 0.43 +1.6 626,806 - CSW01_17645 0.43 +0.2 626,834 + CSW01_17645 0.46 +1.1 626,844 - CSW01_17645 0.46 -1.0 626,981 + CSW01_17645 0.58 -3.0 627,015 + CSW01_17645 0.61 -1.9 627,188 - CSW01_17645 0.75 +0.6 627,230 - CSW01_17645 0.78 +2.6 627,230 - CSW01_17645 0.78 +0.9
Or see this region's nucleotide sequence