Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17355

Experiment: ICP3_phage_411_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17350 and CSW01_17355 are separated by 12 nucleotidesCSW01_17355 and CSW01_17360 are separated by 15 nucleotidesCSW01_17360 and CSW01_17365 are separated by 32 nucleotides CSW01_17350: CSW01_17350 - AbrB family transcriptional regulator, at 564,418 to 565,458 _17350 CSW01_17355: CSW01_17355 - D-3-phosphoglycerate dehydrogenase, at 565,471 to 566,442 _17355 CSW01_17360: CSW01_17360 - GNAT family acetyltransferase, at 566,458 to 566,973 _17360 CSW01_17365: CSW01_17365 - DNA mismatch repair protein MutT, at 567,006 to 567,455 _17365 Position (kb) 565 566 567Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 564.511 kb on + strandat 564.519 kb on - strandat 564.552 kb on + strand, within CSW01_17350at 564.562 kb on + strand, within CSW01_17350at 564.692 kb on + strand, within CSW01_17350at 564.692 kb on + strand, within CSW01_17350at 564.700 kb on - strand, within CSW01_17350at 564.702 kb on + strand, within CSW01_17350at 564.710 kb on - strand, within CSW01_17350at 564.717 kb on + strand, within CSW01_17350at 564.838 kb on + strand, within CSW01_17350at 564.872 kb on + strand, within CSW01_17350at 564.880 kb on - strand, within CSW01_17350at 564.882 kb on + strand, within CSW01_17350at 565.022 kb on + strand, within CSW01_17350at 565.029 kb on - strand, within CSW01_17350at 565.100 kb on - strand, within CSW01_17350at 565.127 kb on - strand, within CSW01_17350at 565.170 kb on + strand, within CSW01_17350at 565.170 kb on + strand, within CSW01_17350at 565.206 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.456 kb on - strandat 565.477 kb on - strandat 565.522 kb on - strandat 565.522 kb on - strandat 565.654 kb on + strand, within CSW01_17355at 565.656 kb on + strand, within CSW01_17355at 565.664 kb on - strand, within CSW01_17355at 565.668 kb on - strand, within CSW01_17355at 565.687 kb on - strand, within CSW01_17355at 565.692 kb on + strand, within CSW01_17355at 565.702 kb on - strand, within CSW01_17355at 566.017 kb on - strand, within CSW01_17355at 566.020 kb on + strand, within CSW01_17355at 566.028 kb on - strand, within CSW01_17355at 566.057 kb on + strand, within CSW01_17355at 566.057 kb on + strand, within CSW01_17355at 566.065 kb on - strand, within CSW01_17355at 566.104 kb on + strand, within CSW01_17355at 566.111 kb on - strand, within CSW01_17355at 566.112 kb on - strand, within CSW01_17355at 566.174 kb on + strand, within CSW01_17355at 566.182 kb on - strand, within CSW01_17355at 566.182 kb on - strand, within CSW01_17355at 566.184 kb on + strand, within CSW01_17355at 566.265 kb on + strand, within CSW01_17355at 566.284 kb on + strand, within CSW01_17355at 566.476 kb on - strandat 566.489 kb on - strandat 566.670 kb on + strand, within CSW01_17360at 566.726 kb on - strand, within CSW01_17360at 566.811 kb on + strand, within CSW01_17360at 566.811 kb on + strand, within CSW01_17360at 566.819 kb on - strand, within CSW01_17360at 566.819 kb on - strand, within CSW01_17360at 567.011 kb on + strandat 567.019 kb on - strandat 567.144 kb on - strand, within CSW01_17365at 567.155 kb on + strand, within CSW01_17365at 567.160 kb on - strand, within CSW01_17365at 567.162 kb on - strand, within CSW01_17365at 567.209 kb on + strand, within CSW01_17365at 567.217 kb on - strand, within CSW01_17365at 567.217 kb on - strand, within CSW01_17365at 567.276 kb on + strand, within CSW01_17365at 567.378 kb on - strand, within CSW01_17365

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
remove
564,511 + -2.3
564,519 - +0.6
564,552 + CSW01_17350 0.13 -1.6
564,562 + CSW01_17350 0.14 +1.3
564,692 + CSW01_17350 0.26 -0.2
564,692 + CSW01_17350 0.26 -0.6
564,700 - CSW01_17350 0.27 -0.7
564,702 + CSW01_17350 0.27 +0.7
564,710 - CSW01_17350 0.28 -1.2
564,717 + CSW01_17350 0.29 -0.4
564,838 + CSW01_17350 0.40 +1.0
564,872 + CSW01_17350 0.44 +0.4
564,880 - CSW01_17350 0.44 +0.2
564,882 + CSW01_17350 0.45 -1.0
565,022 + CSW01_17350 0.58 +0.4
565,029 - CSW01_17350 0.59 -0.8
565,100 - CSW01_17350 0.66 -1.6
565,127 - CSW01_17350 0.68 -1.6
565,170 + CSW01_17350 0.72 -2.5
565,170 + CSW01_17350 0.72 -0.2
565,206 + CSW01_17350 0.76 -2.7
565,207 + CSW01_17350 0.76 -0.6
565,207 + CSW01_17350 0.76 +0.9
565,207 + CSW01_17350 0.76 +0.6
565,207 + CSW01_17350 0.76 +0.1
565,207 + CSW01_17350 0.76 +0.9
565,207 + CSW01_17350 0.76 -0.3
565,207 + CSW01_17350 0.76 -3.4
565,207 + CSW01_17350 0.76 +0.9
565,207 + CSW01_17350 0.76 -1.3
565,215 - CSW01_17350 0.77 +0.1
565,215 - CSW01_17350 0.77 +0.4
565,215 - CSW01_17350 0.77 -3.2
565,215 - CSW01_17350 0.77 +0.1
565,215 - CSW01_17350 0.77 -1.5
565,215 - CSW01_17350 0.77 -1.8
565,215 - CSW01_17350 0.77 +1.7
565,215 - CSW01_17350 0.77 +0.1
565,215 - CSW01_17350 0.77 +0.8
565,215 - CSW01_17350 0.77 +0.8
565,215 - CSW01_17350 0.77 -1.6
565,456 - +0.8
565,477 - +2.3
565,522 - -1.6
565,522 - -0.2
565,654 + CSW01_17355 0.19 -2.8
565,656 + CSW01_17355 0.19 +2.7
565,664 - CSW01_17355 0.20 -2.4
565,668 - CSW01_17355 0.20 -1.3
565,687 - CSW01_17355 0.22 +0.8
565,692 + CSW01_17355 0.23 -0.2
565,702 - CSW01_17355 0.24 -1.7
566,017 - CSW01_17355 0.56 +0.7
566,020 + CSW01_17355 0.56 -0.9
566,028 - CSW01_17355 0.57 +0.3
566,057 + CSW01_17355 0.60 +0.8
566,057 + CSW01_17355 0.60 +0.0
566,065 - CSW01_17355 0.61 -1.2
566,104 + CSW01_17355 0.65 +1.0
566,111 - CSW01_17355 0.66 +2.1
566,112 - CSW01_17355 0.66 +2.3
566,174 + CSW01_17355 0.72 +1.1
566,182 - CSW01_17355 0.73 -0.4
566,182 - CSW01_17355 0.73 -0.3
566,184 + CSW01_17355 0.73 +0.8
566,265 + CSW01_17355 0.82 +1.4
566,284 + CSW01_17355 0.84 -0.2
566,476 - +0.7
566,489 - +0.9
566,670 + CSW01_17360 0.41 -0.1
566,726 - CSW01_17360 0.52 +0.8
566,811 + CSW01_17360 0.68 -1.0
566,811 + CSW01_17360 0.68 -0.4
566,819 - CSW01_17360 0.70 +0.5
566,819 - CSW01_17360 0.70 -2.6
567,011 + +1.2
567,019 - +0.2
567,144 - CSW01_17365 0.31 +0.1
567,155 + CSW01_17365 0.33 -2.4
567,160 - CSW01_17365 0.34 +2.4
567,162 - CSW01_17365 0.35 +0.0
567,209 + CSW01_17365 0.45 -1.9
567,217 - CSW01_17365 0.47 +0.3
567,217 - CSW01_17365 0.47 +1.7
567,276 + CSW01_17365 0.60 -1.4
567,378 - CSW01_17365 0.83 -0.9

Or see this region's nucleotide sequence