Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17315 and CSW01_17320 overlap by 2 nucleotides CSW01_17320 and CSW01_17325 are separated by 483 nucleotides CSW01_17325 and CSW01_17330 are separated by 48 nucleotides
CSW01_17315: CSW01_17315 - DNA-binding protein, at 553,709 to 554,704
_17315
CSW01_17320: CSW01_17320 - hypothetical protein, at 554,703 to 554,813
_17320
CSW01_17325: CSW01_17325 - transaldolase, at 555,297 to 556,247
_17325
CSW01_17330: CSW01_17330 - transketolase, at 556,296 to 558,338
_17330
Position (kb) 555
556
557 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 554.300 kb on + strand, within CSW01_17315 at 554.340 kb on - strand, within CSW01_17315 at 554.352 kb on - strand, within CSW01_17315 at 554.420 kb on - strand, within CSW01_17315 at 554.420 kb on - strand, within CSW01_17315 at 554.481 kb on + strand, within CSW01_17315 at 554.489 kb on - strand, within CSW01_17315 at 554.612 kb on + strand at 554.620 kb on + strand at 554.665 kb on + strand at 554.727 kb on + strand, within CSW01_17320 at 554.744 kb on + strand, within CSW01_17320 at 554.750 kb on - strand, within CSW01_17320 at 554.750 kb on - strand, within CSW01_17320 at 554.752 kb on - strand, within CSW01_17320 at 554.879 kb on - strand at 554.879 kb on - strand at 554.882 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.093 kb on - strand at 555.093 kb on - strand at 555.093 kb on - strand at 555.093 kb on - strand at 555.173 kb on + strand at 555.250 kb on + strand at 555.395 kb on + strand, within CSW01_17325 at 555.395 kb on + strand, within CSW01_17325 at 555.413 kb on + strand, within CSW01_17325 at 555.440 kb on - strand, within CSW01_17325 at 555.444 kb on + strand, within CSW01_17325 at 555.459 kb on + strand, within CSW01_17325 at 555.504 kb on + strand, within CSW01_17325 at 555.512 kb on - strand, within CSW01_17325 at 555.514 kb on + strand, within CSW01_17325 at 555.751 kb on + strand, within CSW01_17325 at 555.765 kb on + strand, within CSW01_17325 at 555.767 kb on + strand, within CSW01_17325 at 555.840 kb on + strand, within CSW01_17325 at 555.866 kb on - strand, within CSW01_17325 at 555.891 kb on + strand, within CSW01_17325 at 555.928 kb on + strand, within CSW01_17325 at 555.936 kb on - strand, within CSW01_17325 at 555.954 kb on + strand, within CSW01_17325 at 556.021 kb on + strand, within CSW01_17325 at 556.054 kb on - strand, within CSW01_17325 at 556.064 kb on - strand, within CSW01_17325 at 556.113 kb on + strand, within CSW01_17325 at 556.178 kb on + strand at 556.186 kb on - strand at 556.298 kb on + strand at 556.584 kb on - strand, within CSW01_17330 at 556.584 kb on - strand, within CSW01_17330 at 556.584 kb on - strand, within CSW01_17330 at 556.584 kb on - strand, within CSW01_17330 at 556.644 kb on + strand, within CSW01_17330 at 556.830 kb on + strand, within CSW01_17330 at 556.863 kb on - strand, within CSW01_17330 at 556.863 kb on - strand, within CSW01_17330 at 556.863 kb on - strand, within CSW01_17330 at 556.942 kb on + strand, within CSW01_17330 at 557.130 kb on + strand, within CSW01_17330 at 557.130 kb on + strand, within CSW01_17330 at 557.138 kb on - strand, within CSW01_17330 at 557.147 kb on + strand, within CSW01_17330 at 557.155 kb on - strand, within CSW01_17330
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 554,300 + CSW01_17315 0.59 +0.3 554,340 - CSW01_17315 0.63 +1.4 554,352 - CSW01_17315 0.65 +0.9 554,420 - CSW01_17315 0.71 -1.2 554,420 - CSW01_17315 0.71 +0.8 554,481 + CSW01_17315 0.78 +0.1 554,489 - CSW01_17315 0.78 -0.6 554,612 + +0.3 554,620 + +0.3 554,665 + -0.0 554,727 + CSW01_17320 0.22 -0.8 554,744 + CSW01_17320 0.37 -2.0 554,750 - CSW01_17320 0.42 +0.7 554,750 - CSW01_17320 0.42 +0.2 554,752 - CSW01_17320 0.44 -1.0 554,879 - +0.8 554,879 - +0.9 554,882 + +1.2 555,085 + -3.0 555,085 + -0.7 555,085 + +0.7 555,085 + -0.1 555,085 + -0.4 555,085 + -1.4 555,085 + -1.3 555,085 + -0.4 555,085 + +0.3 555,093 - -2.6 555,093 - -1.1 555,093 - -1.7 555,093 - +0.6 555,173 + -1.6 555,250 + -1.4 555,395 + CSW01_17325 0.10 -0.8 555,395 + CSW01_17325 0.10 -3.4 555,413 + CSW01_17325 0.12 -2.5 555,440 - CSW01_17325 0.15 -0.3 555,444 + CSW01_17325 0.15 -1.4 555,459 + CSW01_17325 0.17 -2.8 555,504 + CSW01_17325 0.22 -1.6 555,512 - CSW01_17325 0.23 -3.2 555,514 + CSW01_17325 0.23 -0.8 555,751 + CSW01_17325 0.48 -0.6 555,765 + CSW01_17325 0.49 -1.3 555,767 + CSW01_17325 0.49 -1.8 555,840 + CSW01_17325 0.57 +1.4 555,866 - CSW01_17325 0.60 -0.8 555,891 + CSW01_17325 0.62 -2.1 555,928 + CSW01_17325 0.66 +2.0 555,936 - CSW01_17325 0.67 -1.4 555,954 + CSW01_17325 0.69 -1.7 556,021 + CSW01_17325 0.76 -1.7 556,054 - CSW01_17325 0.80 -3.1 556,064 - CSW01_17325 0.81 -4.1 556,113 + CSW01_17325 0.86 +0.8 556,178 + -2.2 556,186 - -4.1 556,298 + +1.0 556,584 - CSW01_17330 0.14 +0.0 556,584 - CSW01_17330 0.14 +2.3 556,584 - CSW01_17330 0.14 +0.3 556,584 - CSW01_17330 0.14 -0.0 556,644 + CSW01_17330 0.17 +0.9 556,830 + CSW01_17330 0.26 -1.3 556,863 - CSW01_17330 0.28 -0.8 556,863 - CSW01_17330 0.28 -2.2 556,863 - CSW01_17330 0.28 -1.3 556,942 + CSW01_17330 0.32 -2.5 557,130 + CSW01_17330 0.41 -3.3 557,130 + CSW01_17330 0.41 +0.1 557,138 - CSW01_17330 0.41 +0.4 557,147 + CSW01_17330 0.42 +0.6 557,155 - CSW01_17330 0.42 +1.2
Or see this region's nucleotide sequence