Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17250

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17245 and CSW01_17250 are separated by 6 nucleotidesCSW01_17250 and CSW01_17255 are separated by 164 nucleotidesCSW01_17255 and CSW01_17260 are separated by 60 nucleotides CSW01_17245: CSW01_17245 - aspartate aminotransferase family protein, at 540,790 to 542,187 _17245 CSW01_17250: CSW01_17250 - phosphonoacetaldehyde hydrolase, at 542,194 to 543,009 _17250 CSW01_17255: CSW01_17255 - nucleoside diphosphate kinase regulator, at 543,174 to 543,581 _17255 CSW01_17260: CSW01_17260 - noncanonical pyrimidine nucleotidase, YjjG family, at 543,642 to 544,316 _17260 Position (kb) 542 543 544Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 541.228 kb on - strand, within CSW01_17245at 541.281 kb on + strand, within CSW01_17245at 541.365 kb on - strand, within CSW01_17245at 541.365 kb on - strand, within CSW01_17245at 541.365 kb on - strand, within CSW01_17245at 541.446 kb on + strand, within CSW01_17245at 541.449 kb on - strand, within CSW01_17245at 541.531 kb on - strand, within CSW01_17245at 541.570 kb on - strand, within CSW01_17245at 541.570 kb on - strand, within CSW01_17245at 541.659 kb on - strand, within CSW01_17245at 541.696 kb on + strand, within CSW01_17245at 541.696 kb on + strand, within CSW01_17245at 541.704 kb on - strand, within CSW01_17245at 541.704 kb on - strand, within CSW01_17245at 541.704 kb on - strand, within CSW01_17245at 541.704 kb on - strand, within CSW01_17245at 541.711 kb on - strand, within CSW01_17245at 541.717 kb on - strand, within CSW01_17245at 541.718 kb on - strand, within CSW01_17245at 541.934 kb on - strand, within CSW01_17245at 541.953 kb on + strand, within CSW01_17245at 541.953 kb on + strand, within CSW01_17245at 541.953 kb on + strand, within CSW01_17245at 541.984 kb on - strand, within CSW01_17245at 542.012 kb on - strand, within CSW01_17245at 542.016 kb on + strand, within CSW01_17245at 542.121 kb on - strandat 542.139 kb on + strandat 542.156 kb on + strandat 542.250 kb on - strandat 542.349 kb on + strand, within CSW01_17250at 542.349 kb on + strand, within CSW01_17250at 542.364 kb on + strand, within CSW01_17250at 542.390 kb on + strand, within CSW01_17250at 542.390 kb on + strand, within CSW01_17250at 542.398 kb on - strand, within CSW01_17250at 542.511 kb on - strand, within CSW01_17250at 542.527 kb on - strand, within CSW01_17250at 542.527 kb on - strand, within CSW01_17250at 542.527 kb on - strand, within CSW01_17250at 542.573 kb on + strand, within CSW01_17250at 542.619 kb on + strand, within CSW01_17250at 542.633 kb on - strand, within CSW01_17250at 542.719 kb on + strand, within CSW01_17250at 542.806 kb on + strand, within CSW01_17250at 542.840 kb on + strand, within CSW01_17250at 542.840 kb on + strand, within CSW01_17250at 542.840 kb on + strand, within CSW01_17250at 542.840 kb on + strand, within CSW01_17250at 542.848 kb on - strand, within CSW01_17250at 542.848 kb on - strand, within CSW01_17250at 542.848 kb on - strand, within CSW01_17250at 542.848 kb on - strand, within CSW01_17250at 542.944 kb on + strandat 542.984 kb on + strandat 543.072 kb on + strandat 543.125 kb on + strandat 543.182 kb on + strandat 543.228 kb on - strand, within CSW01_17255at 543.269 kb on - strand, within CSW01_17255at 543.292 kb on + strand, within CSW01_17255at 543.401 kb on - strand, within CSW01_17255at 543.414 kb on + strand, within CSW01_17255at 543.422 kb on - strand, within CSW01_17255at 543.491 kb on + strand, within CSW01_17255at 543.494 kb on - strand, within CSW01_17255at 543.834 kb on + strand, within CSW01_17260at 543.877 kb on - strand, within CSW01_17260at 543.990 kb on + strand, within CSW01_17260

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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541,228 - CSW01_17245 0.31 +0.9
541,281 + CSW01_17245 0.35 -1.4
541,365 - CSW01_17245 0.41 +0.1
541,365 - CSW01_17245 0.41 -0.2
541,365 - CSW01_17245 0.41 +0.1
541,446 + CSW01_17245 0.47 +0.4
541,449 - CSW01_17245 0.47 +0.8
541,531 - CSW01_17245 0.53 -0.5
541,570 - CSW01_17245 0.56 -1.3
541,570 - CSW01_17245 0.56 -1.9
541,659 - CSW01_17245 0.62 +0.3
541,696 + CSW01_17245 0.65 +1.7
541,696 + CSW01_17245 0.65 -0.8
541,704 - CSW01_17245 0.65 -2.7
541,704 - CSW01_17245 0.65 +0.3
541,704 - CSW01_17245 0.65 -1.9
541,704 - CSW01_17245 0.65 -1.9
541,711 - CSW01_17245 0.66 -2.8
541,717 - CSW01_17245 0.66 +0.2
541,718 - CSW01_17245 0.66 +0.4
541,934 - CSW01_17245 0.82 -0.2
541,953 + CSW01_17245 0.83 -1.2
541,953 + CSW01_17245 0.83 +0.7
541,953 + CSW01_17245 0.83 -1.6
541,984 - CSW01_17245 0.85 -1.1
542,012 - CSW01_17245 0.87 -2.8
542,016 + CSW01_17245 0.88 +0.9
542,121 - -1.3
542,139 + +0.1
542,156 + +1.6
542,250 - +1.2
542,349 + CSW01_17250 0.19 -0.1
542,349 + CSW01_17250 0.19 +0.8
542,364 + CSW01_17250 0.21 -1.7
542,390 + CSW01_17250 0.24 +0.2
542,390 + CSW01_17250 0.24 +0.8
542,398 - CSW01_17250 0.25 -1.5
542,511 - CSW01_17250 0.39 +1.7
542,527 - CSW01_17250 0.41 -1.7
542,527 - CSW01_17250 0.41 -2.4
542,527 - CSW01_17250 0.41 -1.7
542,573 + CSW01_17250 0.46 -1.0
542,619 + CSW01_17250 0.52 +0.6
542,633 - CSW01_17250 0.54 -1.6
542,719 + CSW01_17250 0.64 +1.1
542,806 + CSW01_17250 0.75 +0.5
542,840 + CSW01_17250 0.79 -1.9
542,840 + CSW01_17250 0.79 +0.4
542,840 + CSW01_17250 0.79 -3.6
542,840 + CSW01_17250 0.79 +0.1
542,848 - CSW01_17250 0.80 +1.3
542,848 - CSW01_17250 0.80 -0.9
542,848 - CSW01_17250 0.80 +0.9
542,848 - CSW01_17250 0.80 +0.8
542,944 + -1.8
542,984 + +1.1
543,072 + +0.6
543,125 + +0.4
543,182 + -0.3
543,228 - CSW01_17255 0.13 -2.9
543,269 - CSW01_17255 0.23 +0.4
543,292 + CSW01_17255 0.29 +1.2
543,401 - CSW01_17255 0.56 +0.5
543,414 + CSW01_17255 0.59 +0.3
543,422 - CSW01_17255 0.61 +1.9
543,491 + CSW01_17255 0.78 -1.1
543,494 - CSW01_17255 0.78 +0.1
543,834 + CSW01_17260 0.28 -1.7
543,877 - CSW01_17260 0.35 +0.5
543,990 + CSW01_17260 0.52 -1.9

Or see this region's nucleotide sequence