Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16985 and CSW01_16990 are separated by 88 nucleotides CSW01_16990 and CSW01_16995 are separated by 150 nucleotides CSW01_16995 and CSW01_17000 are separated by 410 nucleotides
CSW01_16985: CSW01_16985 - 9-hexadecenoic acid cis-trans isomerase, at 486,352 to 488,652
_16985
CSW01_16990: CSW01_16990 - hypothetical protein, at 488,741 to 488,914
_16990
CSW01_16995: CSW01_16995 - MFS transporter, at 489,065 to 490,297
_16995
CSW01_17000: CSW01_17000 - DUF3332 domain-containing protein, at 490,708 to 491,262
_17000
Position (kb) 489
490
491 Strain fitness (log2 ratio) -2
-1
0
1
2 at 488.092 kb on + strand, within CSW01_16985 at 488.097 kb on + strand, within CSW01_16985 at 488.097 kb on + strand, within CSW01_16985 at 488.102 kb on + strand, within CSW01_16985 at 488.148 kb on + strand, within CSW01_16985 at 488.373 kb on - strand, within CSW01_16985 at 488.426 kb on - strand at 488.434 kb on + strand at 488.581 kb on + strand at 488.581 kb on - strand at 488.605 kb on + strand at 488.613 kb on - strand at 488.615 kb on + strand at 488.623 kb on - strand at 488.628 kb on + strand at 488.635 kb on + strand at 488.635 kb on + strand at 488.643 kb on - strand at 488.817 kb on + strand, within CSW01_16990 at 488.909 kb on + strand at 488.950 kb on - strand at 489.080 kb on - strand at 489.107 kb on - strand at 489.135 kb on - strand at 489.200 kb on + strand, within CSW01_16995 at 489.200 kb on + strand, within CSW01_16995 at 489.203 kb on - strand, within CSW01_16995 at 489.517 kb on + strand, within CSW01_16995 at 489.523 kb on - strand, within CSW01_16995 at 489.609 kb on - strand, within CSW01_16995 at 489.613 kb on + strand, within CSW01_16995 at 489.621 kb on + strand, within CSW01_16995 at 489.621 kb on + strand, within CSW01_16995 at 489.634 kb on - strand, within CSW01_16995 at 489.634 kb on - strand, within CSW01_16995 at 489.756 kb on - strand, within CSW01_16995 at 489.845 kb on - strand, within CSW01_16995 at 489.877 kb on - strand, within CSW01_16995 at 489.938 kb on + strand, within CSW01_16995 at 489.944 kb on + strand, within CSW01_16995 at 490.009 kb on + strand, within CSW01_16995 at 490.102 kb on - strand, within CSW01_16995 at 490.102 kb on - strand, within CSW01_16995 at 490.157 kb on - strand, within CSW01_16995 at 490.279 kb on - strand at 490.725 kb on + strand at 490.909 kb on - strand, within CSW01_17000 at 491.064 kb on - strand, within CSW01_17000 at 491.139 kb on - strand, within CSW01_17000 at 491.213 kb on - strand at 491.285 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 488,092 + CSW01_16985 0.76 +2.1 488,097 + CSW01_16985 0.76 +1.2 488,097 + CSW01_16985 0.76 +1.1 488,102 + CSW01_16985 0.76 +1.3 488,148 + CSW01_16985 0.78 -0.4 488,373 - CSW01_16985 0.88 -0.2 488,426 - -0.4 488,434 + +1.8 488,581 + -1.4 488,581 - +0.1 488,605 + -1.0 488,613 - -2.3 488,615 + +1.3 488,623 - -1.2 488,628 + -0.0 488,635 + +2.2 488,635 + -0.2 488,643 - +0.4 488,817 + CSW01_16990 0.44 -1.5 488,909 + -1.7 488,950 - +0.1 489,080 - -1.6 489,107 - -1.0 489,135 - +0.7 489,200 + CSW01_16995 0.11 +0.7 489,200 + CSW01_16995 0.11 -0.4 489,203 - CSW01_16995 0.11 +0.0 489,517 + CSW01_16995 0.37 +1.5 489,523 - CSW01_16995 0.37 +0.5 489,609 - CSW01_16995 0.44 -0.4 489,613 + CSW01_16995 0.44 +0.1 489,621 + CSW01_16995 0.45 +0.1 489,621 + CSW01_16995 0.45 -0.6 489,634 - CSW01_16995 0.46 +0.1 489,634 - CSW01_16995 0.46 -0.7 489,756 - CSW01_16995 0.56 -2.6 489,845 - CSW01_16995 0.63 -0.1 489,877 - CSW01_16995 0.66 -0.3 489,938 + CSW01_16995 0.71 -1.4 489,944 + CSW01_16995 0.71 +0.1 490,009 + CSW01_16995 0.77 +0.8 490,102 - CSW01_16995 0.84 -0.4 490,102 - CSW01_16995 0.84 -0.5 490,157 - CSW01_16995 0.89 +0.7 490,279 - -0.9 490,725 + -1.8 490,909 - CSW01_17000 0.36 -0.2 491,064 - CSW01_17000 0.64 -0.7 491,139 - CSW01_17000 0.78 +0.2 491,213 - +1.2 491,285 + +0.9
Or see this region's nucleotide sequence