Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16965 and CSW01_16970 are separated by 149 nucleotides CSW01_16970 and CSW01_16975 are separated by 183 nucleotides CSW01_16975 and CSW01_16980 are separated by 53 nucleotides CSW01_16980 and CSW01_16985 are separated by 167 nucleotides
CSW01_16965: CSW01_16965 - hypothetical protein, at 483,721 to 483,909
_16965
CSW01_16970: CSW01_16970 - alkylphosphonate utilization protein, at 484,059 to 484,634
_16970
CSW01_16975: CSW01_16975 - site-2 protease family protein, at 484,818 to 485,900
_16975
CSW01_16980: CSW01_16980 - hypothetical protein, at 485,954 to 486,184
_16980
CSW01_16985: CSW01_16985 - 9-hexadecenoic acid cis-trans isomerase, at 486,352 to 488,652
_16985
Position (kb) 484
485
486 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 483.911 kb on + strand at 484.069 kb on + strand at 484.102 kb on - strand at 484.142 kb on + strand, within CSW01_16970 at 484.150 kb on - strand, within CSW01_16970 at 484.157 kb on + strand, within CSW01_16970 at 484.157 kb on - strand, within CSW01_16970 at 484.165 kb on - strand, within CSW01_16970 at 484.165 kb on - strand, within CSW01_16970 at 484.392 kb on + strand, within CSW01_16970 at 484.410 kb on - strand, within CSW01_16970 at 484.527 kb on - strand, within CSW01_16970 at 484.559 kb on + strand, within CSW01_16970 at 484.594 kb on - strand at 484.787 kb on - strand at 484.824 kb on - strand at 484.834 kb on - strand at 484.834 kb on - strand at 484.914 kb on + strand at 484.914 kb on + strand at 484.937 kb on + strand, within CSW01_16975 at 484.958 kb on - strand, within CSW01_16975 at 484.994 kb on - strand, within CSW01_16975 at 485.039 kb on + strand, within CSW01_16975 at 485.070 kb on + strand, within CSW01_16975 at 485.131 kb on - strand, within CSW01_16975 at 485.215 kb on - strand, within CSW01_16975 at 485.295 kb on + strand, within CSW01_16975 at 485.358 kb on - strand, within CSW01_16975 at 485.480 kb on - strand, within CSW01_16975 at 485.506 kb on - strand, within CSW01_16975 at 485.506 kb on - strand, within CSW01_16975 at 485.684 kb on - strand, within CSW01_16975 at 485.685 kb on - strand, within CSW01_16975 at 485.804 kb on - strand at 485.932 kb on + strand at 485.934 kb on + strand at 485.984 kb on + strand, within CSW01_16980 at 486.009 kb on + strand, within CSW01_16980 at 486.009 kb on + strand, within CSW01_16980 at 486.122 kb on - strand, within CSW01_16980 at 486.138 kb on + strand, within CSW01_16980 at 486.190 kb on - strand at 486.224 kb on + strand at 486.232 kb on - strand at 486.232 kb on - strand at 486.291 kb on + strand at 486.397 kb on + strand at 486.558 kb on + strand at 486.629 kb on + strand, within CSW01_16985 at 486.686 kb on + strand, within CSW01_16985 at 486.686 kb on + strand, within CSW01_16985 at 486.686 kb on + strand, within CSW01_16985 at 486.855 kb on + strand, within CSW01_16985
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 483,911 + -0.1 484,069 + -1.4 484,102 - +0.8 484,142 + CSW01_16970 0.14 +0.5 484,150 - CSW01_16970 0.16 +1.0 484,157 + CSW01_16970 0.17 +1.3 484,157 - CSW01_16970 0.17 +1.2 484,165 - CSW01_16970 0.18 -0.5 484,165 - CSW01_16970 0.18 -1.1 484,392 + CSW01_16970 0.58 +0.4 484,410 - CSW01_16970 0.61 +0.7 484,527 - CSW01_16970 0.81 +1.1 484,559 + CSW01_16970 0.87 -0.5 484,594 - +1.4 484,787 - -0.2 484,824 - -0.1 484,834 - -0.6 484,834 - +1.5 484,914 + +0.5 484,914 + +0.6 484,937 + CSW01_16975 0.11 +1.0 484,958 - CSW01_16975 0.13 -2.2 484,994 - CSW01_16975 0.16 +0.3 485,039 + CSW01_16975 0.20 -1.1 485,070 + CSW01_16975 0.23 +1.0 485,131 - CSW01_16975 0.29 -0.1 485,215 - CSW01_16975 0.37 +0.7 485,295 + CSW01_16975 0.44 -3.9 485,358 - CSW01_16975 0.50 +0.3 485,480 - CSW01_16975 0.61 -3.2 485,506 - CSW01_16975 0.64 +0.2 485,506 - CSW01_16975 0.64 +0.1 485,684 - CSW01_16975 0.80 +2.6 485,685 - CSW01_16975 0.80 +1.1 485,804 - -3.1 485,932 + +0.7 485,934 + +0.0 485,984 + CSW01_16980 0.13 -0.3 486,009 + CSW01_16980 0.24 -1.4 486,009 + CSW01_16980 0.24 -2.8 486,122 - CSW01_16980 0.73 +1.1 486,138 + CSW01_16980 0.80 +0.3 486,190 - +1.1 486,224 + +0.5 486,232 - -0.5 486,232 - +0.9 486,291 + -1.6 486,397 + +0.8 486,558 + -2.4 486,629 + CSW01_16985 0.12 +1.7 486,686 + CSW01_16985 0.15 -3.2 486,686 + CSW01_16985 0.15 -0.4 486,686 + CSW01_16985 0.15 -0.5 486,855 + CSW01_16985 0.22 +0.2
Or see this region's nucleotide sequence