Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16800 and CSW01_16805 are separated by 4 nucleotides CSW01_16805 and CSW01_16810 are separated by 121 nucleotides CSW01_16810 and CSW01_16815 are separated by 57 nucleotides CSW01_16815 and CSW01_16820 are separated by 233 nucleotides
CSW01_16800: CSW01_16800 - anaerobic ribonucleoside-triphosphate reductase, at 438,472 to 440,592
_16800
CSW01_16805: CSW01_16805 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 440,597 to 441,064
_16805
CSW01_16810: CSW01_16810 - aspartate/tyrosine/aromatic aminotransferase, at 441,186 to 442,367
_16810
CSW01_16815: CSW01_16815 - ATP-dependent zinc protease, at 442,425 to 443,108
_16815
CSW01_16820: CSW01_16820 - PTS fructose transporter subunit IIBC, at 443,342 to 445,084
_16820
Position (kb) 441
442
443 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 440.220 kb on - strand, within CSW01_16800 at 440.222 kb on + strand, within CSW01_16800 at 440.354 kb on - strand, within CSW01_16800 at 440.515 kb on + strand at 440.525 kb on + strand at 440.525 kb on + strand at 440.533 kb on - strand at 440.533 kb on - strand at 440.637 kb on - strand at 440.721 kb on + strand, within CSW01_16805 at 440.857 kb on - strand, within CSW01_16805 at 440.869 kb on + strand, within CSW01_16805 at 440.912 kb on + strand, within CSW01_16805 at 440.912 kb on + strand, within CSW01_16805 at 440.912 kb on + strand, within CSW01_16805 at 440.912 kb on + strand, within CSW01_16805 at 440.912 kb on + strand, within CSW01_16805 at 440.920 kb on - strand, within CSW01_16805 at 440.920 kb on - strand, within CSW01_16805 at 441.011 kb on + strand, within CSW01_16805 at 441.074 kb on - strand at 441.088 kb on - strand at 441.336 kb on - strand, within CSW01_16810 at 441.394 kb on + strand, within CSW01_16810 at 441.421 kb on - strand, within CSW01_16810 at 441.444 kb on - strand, within CSW01_16810 at 441.445 kb on + strand, within CSW01_16810 at 441.580 kb on - strand, within CSW01_16810 at 441.580 kb on - strand, within CSW01_16810 at 441.835 kb on + strand, within CSW01_16810 at 441.843 kb on - strand, within CSW01_16810 at 441.882 kb on + strand, within CSW01_16810 at 441.901 kb on - strand, within CSW01_16810 at 441.935 kb on + strand, within CSW01_16810 at 441.943 kb on - strand, within CSW01_16810 at 441.994 kb on + strand, within CSW01_16810 at 442.006 kb on + strand, within CSW01_16810 at 442.007 kb on - strand, within CSW01_16810 at 442.045 kb on + strand, within CSW01_16810 at 442.063 kb on - strand, within CSW01_16810 at 442.072 kb on + strand, within CSW01_16810 at 442.129 kb on + strand, within CSW01_16810 at 442.257 kb on - strand at 442.276 kb on - strand at 442.434 kb on + strand at 442.551 kb on + strand, within CSW01_16815 at 442.595 kb on + strand, within CSW01_16815 at 442.595 kb on + strand, within CSW01_16815 at 442.602 kb on + strand, within CSW01_16815 at 442.922 kb on + strand, within CSW01_16815 at 442.922 kb on + strand, within CSW01_16815 at 442.922 kb on + strand, within CSW01_16815 at 442.922 kb on + strand, within CSW01_16815 at 442.930 kb on - strand, within CSW01_16815 at 442.930 kb on - strand, within CSW01_16815 at 442.930 kb on - strand, within CSW01_16815 at 442.930 kb on - strand, within CSW01_16815 at 443.001 kb on + strand, within CSW01_16815 at 443.001 kb on + strand, within CSW01_16815 at 443.001 kb on + strand, within CSW01_16815
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 440,220 - CSW01_16800 0.82 -1.0 440,222 + CSW01_16800 0.83 -0.3 440,354 - CSW01_16800 0.89 -0.8 440,515 + +2.3 440,525 + +0.6 440,525 + -0.6 440,533 - -1.0 440,533 - +0.3 440,637 - +0.5 440,721 + CSW01_16805 0.26 -2.7 440,857 - CSW01_16805 0.56 +1.2 440,869 + CSW01_16805 0.58 -2.7 440,912 + CSW01_16805 0.67 +1.4 440,912 + CSW01_16805 0.67 +0.1 440,912 + CSW01_16805 0.67 +0.1 440,912 + CSW01_16805 0.67 +1.1 440,912 + CSW01_16805 0.67 -1.0 440,920 - CSW01_16805 0.69 +0.5 440,920 - CSW01_16805 0.69 +0.8 441,011 + CSW01_16805 0.88 +1.7 441,074 - +0.1 441,088 - -1.0 441,336 - CSW01_16810 0.13 +1.4 441,394 + CSW01_16810 0.18 -0.3 441,421 - CSW01_16810 0.20 +0.4 441,444 - CSW01_16810 0.22 -2.1 441,445 + CSW01_16810 0.22 +1.9 441,580 - CSW01_16810 0.33 -3.4 441,580 - CSW01_16810 0.33 -1.3 441,835 + CSW01_16810 0.55 +0.7 441,843 - CSW01_16810 0.56 +1.8 441,882 + CSW01_16810 0.59 -1.4 441,901 - CSW01_16810 0.60 -0.3 441,935 + CSW01_16810 0.63 -0.0 441,943 - CSW01_16810 0.64 +1.1 441,994 + CSW01_16810 0.68 +2.2 442,006 + CSW01_16810 0.69 +1.3 442,007 - CSW01_16810 0.69 +1.8 442,045 + CSW01_16810 0.73 +1.8 442,063 - CSW01_16810 0.74 +0.6 442,072 + CSW01_16810 0.75 -0.4 442,129 + CSW01_16810 0.80 -1.1 442,257 - +0.8 442,276 - -3.4 442,434 + +1.3 442,551 + CSW01_16815 0.18 -1.4 442,595 + CSW01_16815 0.25 +0.6 442,595 + CSW01_16815 0.25 +1.0 442,602 + CSW01_16815 0.26 -1.2 442,922 + CSW01_16815 0.73 +0.3 442,922 + CSW01_16815 0.73 -0.9 442,922 + CSW01_16815 0.73 +0.1 442,922 + CSW01_16815 0.73 +1.9 442,930 - CSW01_16815 0.74 +1.7 442,930 - CSW01_16815 0.74 +1.2 442,930 - CSW01_16815 0.74 -2.4 442,930 - CSW01_16815 0.74 -0.3 443,001 + CSW01_16815 0.84 +1.3 443,001 + CSW01_16815 0.84 +1.5 443,001 + CSW01_16815 0.84 +1.8
Or see this region's nucleotide sequence