Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16780 and CSW01_16785 are separated by 217 nucleotides CSW01_16785 and CSW01_16790 are separated by 67 nucleotides CSW01_16790 and CSW01_16795 are separated by 289 nucleotides
CSW01_16780: CSW01_16780 - VOC family protein, at 432,668 to 433,081
_16780
CSW01_16785: CSW01_16785 - hypothetical protein, at 433,299 to 433,568
_16785
CSW01_16790: CSW01_16790 - IS3 family transposase, at 433,636 to 434,813
_16790
CSW01_16795: CSW01_16795 - nucleotide pyrophosphatase, at 435,103 to 438,009
_16795
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 433.294 kb on + strand at 433.339 kb on - strand, within CSW01_16785 at 433.355 kb on + strand, within CSW01_16785 at 433.461 kb on - strand, within CSW01_16785 at 433.479 kb on + strand, within CSW01_16785 at 433.486 kb on - strand, within CSW01_16785 at 433.535 kb on - strand, within CSW01_16785 at 434.786 kb on + strand at 434.966 kb on + strand at 434.974 kb on + strand at 435.023 kb on - strand at 435.077 kb on - strand at 435.141 kb on - strand at 435.141 kb on - strand at 435.324 kb on + strand at 435.353 kb on + strand at 435.353 kb on + strand at 435.425 kb on + strand, within CSW01_16795 at 435.532 kb on + strand, within CSW01_16795 at 435.540 kb on - strand, within CSW01_16795 at 435.540 kb on - strand, within CSW01_16795 at 435.542 kb on + strand, within CSW01_16795 at 435.572 kb on + strand, within CSW01_16795 at 435.666 kb on - strand, within CSW01_16795 at 435.698 kb on + strand, within CSW01_16795 at 435.726 kb on + strand, within CSW01_16795 at 435.787 kb on + strand, within CSW01_16795
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 433,294 + -1.6 433,339 - CSW01_16785 0.15 +1.3 433,355 + CSW01_16785 0.21 +1.1 433,461 - CSW01_16785 0.60 -1.6 433,479 + CSW01_16785 0.67 -0.4 433,486 - CSW01_16785 0.69 -0.8 433,535 - CSW01_16785 0.87 +0.1 434,786 + +0.6 434,966 + -2.1 434,974 + +1.5 435,023 - -0.7 435,077 - +1.1 435,141 - -0.9 435,141 - +0.5 435,324 + +1.0 435,353 + -1.5 435,353 + -3.3 435,425 + CSW01_16795 0.11 -0.6 435,532 + CSW01_16795 0.15 -1.1 435,540 - CSW01_16795 0.15 +1.4 435,540 - CSW01_16795 0.15 -0.7 435,542 + CSW01_16795 0.15 -1.3 435,572 + CSW01_16795 0.16 +1.9 435,666 - CSW01_16795 0.19 -3.1 435,698 + CSW01_16795 0.20 +1.3 435,726 + CSW01_16795 0.21 +0.7 435,787 + CSW01_16795 0.24 -3.0
Or see this region's nucleotide sequence