Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16480

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16475 and CSW01_16480 are separated by 146 nucleotidesCSW01_16480 and CSW01_16485 are separated by 146 nucleotidesCSW01_16485 and CSW01_16490 are separated by 142 nucleotides CSW01_16475: CSW01_16475 - hypothetical protein, at 405,959 to 406,573 _16475 CSW01_16480: CSW01_16480 - DUF2806 domain-containing protein, at 406,720 to 407,577 _16480 CSW01_16485: CSW01_16485 - hypothetical protein, at 407,724 to 408,284 _16485 CSW01_16490: CSW01_16490 - hypothetical protein, at 408,427 to 408,774 _16490 Position (kb) 406 407 408Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on + strandat 405.875 kb on - strandat 405.883 kb on - strandat 405.883 kb on - strandat 405.883 kb on - strandat 405.890 kb on - strandat 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.127 kb on + strand, within CSW01_16475at 406.135 kb on - strand, within CSW01_16475at 406.135 kb on - strand, within CSW01_16475at 406.173 kb on + strand, within CSW01_16475at 406.181 kb on - strand, within CSW01_16475at 406.181 kb on - strand, within CSW01_16475at 406.209 kb on + strand, within CSW01_16475at 406.209 kb on + strand, within CSW01_16475at 406.217 kb on - strand, within CSW01_16475at 406.221 kb on + strand, within CSW01_16475at 406.229 kb on + strand, within CSW01_16475at 406.229 kb on - strand, within CSW01_16475at 406.264 kb on + strand, within CSW01_16475at 406.274 kb on + strand, within CSW01_16475at 406.275 kb on + strand, within CSW01_16475at 406.282 kb on - strand, within CSW01_16475at 406.307 kb on + strand, within CSW01_16475at 406.308 kb on + strand, within CSW01_16475at 406.318 kb on + strand, within CSW01_16475at 406.365 kb on + strand, within CSW01_16475at 406.582 kb on - strandat 406.582 kb on - strandat 406.594 kb on - strandat 406.594 kb on - strandat 406.626 kb on + strandat 406.634 kb on - strandat 406.634 kb on - strandat 406.634 kb on - strandat 406.639 kb on - strandat 406.641 kb on - strandat 406.661 kb on + strandat 406.661 kb on + strandat 406.667 kb on - strandat 406.669 kb on - strandat 406.669 kb on - strandat 406.669 kb on - strandat 406.676 kb on + strandat 406.677 kb on - strandat 406.684 kb on + strandat 406.684 kb on + strandat 406.694 kb on + strandat 406.788 kb on + strandat 406.818 kb on + strand, within CSW01_16480at 406.818 kb on + strand, within CSW01_16480at 406.859 kb on - strand, within CSW01_16480at 406.859 kb on - strand, within CSW01_16480at 406.891 kb on - strand, within CSW01_16480at 406.908 kb on - strand, within CSW01_16480at 407.024 kb on - strand, within CSW01_16480at 407.025 kb on + strand, within CSW01_16480at 407.025 kb on + strand, within CSW01_16480at 407.025 kb on + strand, within CSW01_16480at 407.033 kb on - strand, within CSW01_16480at 407.033 kb on - strand, within CSW01_16480at 407.035 kb on + strand, within CSW01_16480at 407.084 kb on + strand, within CSW01_16480at 407.159 kb on + strand, within CSW01_16480at 407.161 kb on + strand, within CSW01_16480at 407.177 kb on + strand, within CSW01_16480at 407.217 kb on + strand, within CSW01_16480at 407.217 kb on + strand, within CSW01_16480at 407.217 kb on + strand, within CSW01_16480at 407.233 kb on - strand, within CSW01_16480at 407.314 kb on + strand, within CSW01_16480at 407.314 kb on + strand, within CSW01_16480at 407.374 kb on + strand, within CSW01_16480at 407.492 kb on + strandat 407.549 kb on + strandat 407.556 kb on - strandat 407.557 kb on - strandat 407.557 kb on - strandat 407.592 kb on - strandat 407.606 kb on - strandat 407.636 kb on + strandat 407.644 kb on - strandat 407.649 kb on + strandat 407.649 kb on + strandat 407.649 kb on + strandat 407.649 kb on + strandat 407.649 kb on + strandat 407.657 kb on - strandat 407.679 kb on + strandat 407.679 kb on + strandat 407.689 kb on + strandat 407.689 kb on + strandat 407.697 kb on - strandat 407.702 kb on - strandat 407.702 kb on - strandat 407.702 kb on - strandat 407.712 kb on + strandat 407.720 kb on - strandat 407.757 kb on - strandat 407.767 kb on - strandat 407.769 kb on + strandat 407.769 kb on + strandat 407.769 kb on + strandat 407.769 kb on + strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.812 kb on + strand, within CSW01_16485at 407.817 kb on + strand, within CSW01_16485at 407.822 kb on + strand, within CSW01_16485at 407.822 kb on + strand, within CSW01_16485at 407.825 kb on - strand, within CSW01_16485at 407.825 kb on - strand, within CSW01_16485at 407.827 kb on + strand, within CSW01_16485at 407.827 kb on + strand, within CSW01_16485at 407.830 kb on - strand, within CSW01_16485at 407.830 kb on - strand, within CSW01_16485at 407.830 kb on - strand, within CSW01_16485at 407.830 kb on - strand, within CSW01_16485at 407.834 kb on + strand, within CSW01_16485at 407.836 kb on + strand, within CSW01_16485at 407.836 kb on - strand, within CSW01_16485at 407.837 kb on - strand, within CSW01_16485at 407.841 kb on + strand, within CSW01_16485at 407.841 kb on + strand, within CSW01_16485at 407.844 kb on - strand, within CSW01_16485at 407.848 kb on + strand, within CSW01_16485at 407.849 kb on - strand, within CSW01_16485at 407.856 kb on - strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.885 kb on - strand, within CSW01_16485at 407.982 kb on + strand, within CSW01_16485at 407.982 kb on + strand, within CSW01_16485at 407.990 kb on - strand, within CSW01_16485at 407.995 kb on - strand, within CSW01_16485at 408.015 kb on + strand, within CSW01_16485at 408.036 kb on - strand, within CSW01_16485at 408.044 kb on + strand, within CSW01_16485at 408.096 kb on + strand, within CSW01_16485at 408.133 kb on + strand, within CSW01_16485at 408.133 kb on + strand, within CSW01_16485at 408.255 kb on + strandat 408.255 kb on + strandat 408.263 kb on - strandat 408.263 kb on - strandat 408.274 kb on + strandat 408.396 kb on - strandat 408.396 kb on - strandat 408.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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405,875 + -2.8
405,875 + -0.3
405,875 + -1.6
405,875 + -0.3
405,875 + +1.0
405,875 + +1.5
405,875 - +0.4
405,883 - -1.2
405,883 - -0.4
405,883 - -1.3
405,890 - +0.4
406,127 + CSW01_16475 0.27 -1.9
406,127 + CSW01_16475 0.27 -0.8
406,127 + CSW01_16475 0.27 -2.1
406,127 + CSW01_16475 0.27 +0.8
406,127 + CSW01_16475 0.27 +1.1
406,127 + CSW01_16475 0.27 +0.4
406,127 + CSW01_16475 0.27 +0.4
406,127 + CSW01_16475 0.27 -0.1
406,127 + CSW01_16475 0.27 -2.9
406,127 + CSW01_16475 0.27 +1.2
406,135 - CSW01_16475 0.29 +0.7
406,135 - CSW01_16475 0.29 +0.9
406,173 + CSW01_16475 0.35 +0.3
406,181 - CSW01_16475 0.36 +0.6
406,181 - CSW01_16475 0.36 +0.2
406,209 + CSW01_16475 0.41 +0.5
406,209 + CSW01_16475 0.41 +1.5
406,217 - CSW01_16475 0.42 -1.6
406,221 + CSW01_16475 0.43 +0.8
406,229 + CSW01_16475 0.44 -0.1
406,229 - CSW01_16475 0.44 +1.2
406,264 + CSW01_16475 0.50 +0.3
406,274 + CSW01_16475 0.51 -0.6
406,275 + CSW01_16475 0.51 +0.5
406,282 - CSW01_16475 0.53 -2.9
406,307 + CSW01_16475 0.57 -1.2
406,308 + CSW01_16475 0.57 -2.4
406,318 + CSW01_16475 0.58 -0.1
406,365 + CSW01_16475 0.66 +0.1
406,582 - +0.7
406,582 - -0.9
406,594 - -1.1
406,594 - -2.9
406,626 + -3.0
406,634 - -2.7
406,634 - -1.2
406,634 - +0.6
406,639 - +1.4
406,641 - -3.0
406,661 + -0.0
406,661 + -0.8
406,667 - +0.3
406,669 - -2.4
406,669 - -0.8
406,669 - -1.3
406,676 + -2.5
406,677 - -1.4
406,684 + +1.0
406,684 + +0.4
406,694 + +0.1
406,788 + -1.4
406,818 + CSW01_16480 0.11 +1.0
406,818 + CSW01_16480 0.11 +0.0
406,859 - CSW01_16480 0.16 +0.5
406,859 - CSW01_16480 0.16 +0.6
406,891 - CSW01_16480 0.20 +0.0
406,908 - CSW01_16480 0.22 +0.2
407,024 - CSW01_16480 0.35 -1.9
407,025 + CSW01_16480 0.36 -2.1
407,025 + CSW01_16480 0.36 -0.4
407,025 + CSW01_16480 0.36 +2.5
407,033 - CSW01_16480 0.36 -1.6
407,033 - CSW01_16480 0.36 +0.2
407,035 + CSW01_16480 0.37 -3.0
407,084 + CSW01_16480 0.42 +0.1
407,159 + CSW01_16480 0.51 -1.3
407,161 + CSW01_16480 0.51 -0.2
407,177 + CSW01_16480 0.53 -2.8
407,217 + CSW01_16480 0.58 -1.4
407,217 + CSW01_16480 0.58 -0.3
407,217 + CSW01_16480 0.58 +1.2
407,233 - CSW01_16480 0.60 -1.1
407,314 + CSW01_16480 0.69 +0.1
407,314 + CSW01_16480 0.69 +0.7
407,374 + CSW01_16480 0.76 -0.3
407,492 + -2.8
407,549 + -2.8
407,556 - +1.1
407,557 - +0.3
407,557 - +1.1
407,592 - +0.2
407,606 - +1.5
407,636 + -0.6
407,644 - -0.4
407,649 + +0.9
407,649 + -1.2
407,649 + +1.1
407,649 + +0.4
407,649 + +0.7
407,657 - +0.8
407,679 + +0.2
407,679 + -2.3
407,689 + -0.4
407,689 + +0.6
407,697 - +0.9
407,702 - +0.1
407,702 - -0.0
407,702 - -0.8
407,712 + +1.1
407,720 - -0.3
407,757 - +0.4
407,767 - -0.6
407,769 + -0.7
407,769 + -0.4
407,769 + +0.5
407,769 + +0.9
407,777 - +1.3
407,777 - -0.4
407,777 - -1.5
407,777 - -2.5
407,777 - +0.1
407,777 - -0.5
407,777 - -0.3
407,777 - -0.8
407,812 + CSW01_16485 0.16 -0.5
407,817 + CSW01_16485 0.17 +0.3
407,822 + CSW01_16485 0.17 -0.9
407,822 + CSW01_16485 0.17 +0.2
407,825 - CSW01_16485 0.18 +0.5
407,825 - CSW01_16485 0.18 +0.2
407,827 + CSW01_16485 0.18 +0.8
407,827 + CSW01_16485 0.18 +0.3
407,830 - CSW01_16485 0.19 -3.0
407,830 - CSW01_16485 0.19 -1.1
407,830 - CSW01_16485 0.19 +1.9
407,830 - CSW01_16485 0.19 -2.1
407,834 + CSW01_16485 0.20 -2.5
407,836 + CSW01_16485 0.20 -2.2
407,836 - CSW01_16485 0.20 +0.5
407,837 - CSW01_16485 0.20 +1.0
407,841 + CSW01_16485 0.21 -0.3
407,841 + CSW01_16485 0.21 -3.3
407,844 - CSW01_16485 0.21 +0.4
407,848 + CSW01_16485 0.22 -3.2
407,849 - CSW01_16485 0.22 +0.3
407,856 - CSW01_16485 0.24 +1.9
407,867 + CSW01_16485 0.25 -2.3
407,867 + CSW01_16485 0.25 -2.2
407,867 + CSW01_16485 0.25 -0.1
407,867 + CSW01_16485 0.25 -0.6
407,867 + CSW01_16485 0.25 -0.2
407,867 + CSW01_16485 0.25 -1.6
407,875 - CSW01_16485 0.27 +2.1
407,875 - CSW01_16485 0.27 +1.2
407,875 - CSW01_16485 0.27 +1.0
407,875 - CSW01_16485 0.27 +0.8
407,875 - CSW01_16485 0.27 +1.5
407,875 - CSW01_16485 0.27 +1.1
407,875 - CSW01_16485 0.27 -3.4
407,875 - CSW01_16485 0.27 +0.2
407,885 - CSW01_16485 0.29 +0.6
407,982 + CSW01_16485 0.46 -2.4
407,982 + CSW01_16485 0.46 +1.6
407,990 - CSW01_16485 0.47 -1.3
407,995 - CSW01_16485 0.48 -2.1
408,015 + CSW01_16485 0.52 +0.4
408,036 - CSW01_16485 0.56 -3.2
408,044 + CSW01_16485 0.57 +1.9
408,096 + CSW01_16485 0.66 +0.1
408,133 + CSW01_16485 0.73 -0.8
408,133 + CSW01_16485 0.73 -0.3
408,255 + -3.5
408,255 + +1.5
408,263 - +0.9
408,263 - -0.9
408,274 + -1.9
408,396 - +0.7
408,396 - -4.4
408,396 - -0.8

Or see this region's nucleotide sequence