Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15840

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15825 and CSW01_15830 overlap by 4 nucleotidesCSW01_15830 and CSW01_15835 are separated by 41 nucleotidesCSW01_15835 and CSW01_15840 are separated by 113 nucleotidesCSW01_15840 and CSW01_15845 are separated by 3 nucleotidesCSW01_15845 and CSW01_15850 are separated by 59 nucleotidesCSW01_15850 and CSW01_15855 are separated by 149 nucleotidesCSW01_15855 and CSW01_15860 are separated by 27 nucleotides CSW01_15825: CSW01_15825 - hypothetical protein, at 344,126 to 344,599 _15825 CSW01_15830: CSW01_15830 - DUF3265 domain-containing protein, at 344,596 to 344,706 _15830 CSW01_15835: CSW01_15835 - LysE family translocator, at 344,748 to 345,374 _15835 CSW01_15840: CSW01_15840 - hypothetical protein, at 345,488 to 346,195 _15840 CSW01_15845: CSW01_15845 - DUF3265 domain-containing protein, at 346,199 to 346,315 _15845 CSW01_15850: CSW01_15850 - hypothetical protein, at 346,375 to 346,536 _15850 CSW01_15855: CSW01_15855 - acetyltransferase, at 346,686 to 346,865 _15855 CSW01_15860: CSW01_15860 - DUF645 domain-containing protein, at 346,893 to 347,072 _15860 Position (kb) 345 346 347Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 344.612 kb on - strand, within CSW01_15830at 344.614 kb on - strand, within CSW01_15830at 344.614 kb on - strand, within CSW01_15830at 344.614 kb on - strand, within CSW01_15830at 344.684 kb on + strand, within CSW01_15830at 344.694 kb on + strand, within CSW01_15830at 344.694 kb on + strand, within CSW01_15830at 344.694 kb on + strand, within CSW01_15830at 344.697 kb on - strandat 344.699 kb on + strandat 344.701 kb on + strandat 344.701 kb on + strandat 344.701 kb on + strandat 344.701 kb on + strandat 344.702 kb on - strandat 344.707 kb on - strandat 344.709 kb on - strandat 344.709 kb on - strandat 344.709 kb on - strandat 344.709 kb on - strandat 344.709 kb on - strandat 344.771 kb on + strandat 344.771 kb on + strandat 344.837 kb on - strand, within CSW01_15835at 344.852 kb on + strand, within CSW01_15835at 344.872 kb on - strand, within CSW01_15835at 344.995 kb on - strand, within CSW01_15835at 345.038 kb on + strand, within CSW01_15835at 345.046 kb on - strand, within CSW01_15835at 345.064 kb on + strand, within CSW01_15835at 345.090 kb on + strand, within CSW01_15835at 345.134 kb on + strand, within CSW01_15835at 345.141 kb on - strand, within CSW01_15835at 345.236 kb on + strand, within CSW01_15835at 345.236 kb on + strand, within CSW01_15835at 345.236 kb on + strand, within CSW01_15835at 345.236 kb on - strand, within CSW01_15835at 345.238 kb on + strand, within CSW01_15835at 345.238 kb on + strand, within CSW01_15835at 345.244 kb on - strand, within CSW01_15835at 345.244 kb on - strand, within CSW01_15835at 345.244 kb on - strand, within CSW01_15835at 345.244 kb on - strand, within CSW01_15835at 345.244 kb on - strand, within CSW01_15835at 345.244 kb on - strand, within CSW01_15835at 345.246 kb on + strand, within CSW01_15835at 345.306 kb on + strand, within CSW01_15835at 345.314 kb on - strandat 345.327 kb on - strandat 345.364 kb on + strandat 345.369 kb on + strandat 345.372 kb on - strandat 345.401 kb on + strandat 345.482 kb on + strandat 345.490 kb on - strandat 345.544 kb on + strandat 345.549 kb on + strandat 345.549 kb on + strandat 345.597 kb on - strand, within CSW01_15840at 345.628 kb on + strand, within CSW01_15840at 345.628 kb on + strand, within CSW01_15840at 345.628 kb on + strand, within CSW01_15840at 345.670 kb on + strand, within CSW01_15840at 345.769 kb on + strand, within CSW01_15840at 345.938 kb on - strand, within CSW01_15840at 345.961 kb on + strand, within CSW01_15840at 345.983 kb on + strand, within CSW01_15840at 346.071 kb on - strand, within CSW01_15840at 346.076 kb on - strand, within CSW01_15840at 346.086 kb on - strand, within CSW01_15840at 346.091 kb on - strand, within CSW01_15840at 346.099 kb on - strand, within CSW01_15840at 346.215 kb on + strand, within CSW01_15845at 346.215 kb on + strand, within CSW01_15845at 346.223 kb on - strand, within CSW01_15845at 346.253 kb on + strand, within CSW01_15845at 346.261 kb on - strand, within CSW01_15845at 346.281 kb on - strand, within CSW01_15845at 346.306 kb on - strandat 346.316 kb on - strandat 346.316 kb on - strandat 346.316 kb on - strandat 346.316 kb on - strandat 346.316 kb on - strandat 346.316 kb on - strandat 346.316 kb on - strandat 346.316 kb on - strandat 346.936 kb on + strand, within CSW01_15860at 346.949 kb on + strand, within CSW01_15860at 346.993 kb on + strand, within CSW01_15860at 347.030 kb on + strand, within CSW01_15860

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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344,612 - CSW01_15830 0.14 -1.0
344,614 - CSW01_15830 0.16 +1.4
344,614 - CSW01_15830 0.16 -2.6
344,614 - CSW01_15830 0.16 +0.1
344,684 + CSW01_15830 0.79 +0.8
344,694 + CSW01_15830 0.88 -0.4
344,694 + CSW01_15830 0.88 +1.7
344,694 + CSW01_15830 0.88 +1.2
344,697 - -3.2
344,699 + -1.6
344,701 + -0.8
344,701 + +0.1
344,701 + +0.9
344,701 + -0.4
344,702 - +1.6
344,707 - -0.3
344,709 - -1.9
344,709 - -1.4
344,709 - -2.3
344,709 - +0.1
344,709 - -1.6
344,771 + +1.9
344,771 + +0.6
344,837 - CSW01_15835 0.14 +0.2
344,852 + CSW01_15835 0.17 -0.1
344,872 - CSW01_15835 0.20 +0.8
344,995 - CSW01_15835 0.39 -1.0
345,038 + CSW01_15835 0.46 -0.3
345,046 - CSW01_15835 0.48 +0.9
345,064 + CSW01_15835 0.50 +1.4
345,090 + CSW01_15835 0.55 +1.6
345,134 + CSW01_15835 0.62 +0.0
345,141 - CSW01_15835 0.63 -2.4
345,236 + CSW01_15835 0.78 +0.6
345,236 + CSW01_15835 0.78 -0.3
345,236 + CSW01_15835 0.78 -1.4
345,236 - CSW01_15835 0.78 -0.3
345,238 + CSW01_15835 0.78 +1.1
345,238 + CSW01_15835 0.78 -1.2
345,244 - CSW01_15835 0.79 -0.3
345,244 - CSW01_15835 0.79 +0.1
345,244 - CSW01_15835 0.79 +1.7
345,244 - CSW01_15835 0.79 -2.0
345,244 - CSW01_15835 0.79 -0.5
345,244 - CSW01_15835 0.79 +1.8
345,246 + CSW01_15835 0.79 -1.2
345,306 + CSW01_15835 0.89 +0.3
345,314 - -2.4
345,327 - -0.0
345,364 + +0.6
345,369 + +1.4
345,372 - +1.0
345,401 + +0.6
345,482 + +0.2
345,490 - -0.9
345,544 + +0.4
345,549 + -0.6
345,549 + -0.2
345,597 - CSW01_15840 0.15 -1.4
345,628 + CSW01_15840 0.20 -2.5
345,628 + CSW01_15840 0.20 +1.1
345,628 + CSW01_15840 0.20 -0.6
345,670 + CSW01_15840 0.26 -0.8
345,769 + CSW01_15840 0.40 +1.9
345,938 - CSW01_15840 0.64 -0.3
345,961 + CSW01_15840 0.67 +0.8
345,983 + CSW01_15840 0.70 -2.4
346,071 - CSW01_15840 0.82 -1.8
346,076 - CSW01_15840 0.83 +0.8
346,086 - CSW01_15840 0.84 +0.1
346,091 - CSW01_15840 0.85 -0.3
346,099 - CSW01_15840 0.86 -0.4
346,215 + CSW01_15845 0.14 -1.6
346,215 + CSW01_15845 0.14 +2.6
346,223 - CSW01_15845 0.21 -0.0
346,253 + CSW01_15845 0.46 +0.1
346,261 - CSW01_15845 0.53 -0.4
346,281 - CSW01_15845 0.70 -0.7
346,306 - +0.5
346,316 - -2.6
346,316 - -0.2
346,316 - -1.6
346,316 - +0.4
346,316 - -1.2
346,316 - -1.1
346,316 - +0.7
346,316 - -3.7
346,936 + CSW01_15860 0.24 +2.3
346,949 + CSW01_15860 0.31 +2.0
346,993 + CSW01_15860 0.56 -0.6
347,030 + CSW01_15860 0.76 +1.6

Or see this region's nucleotide sequence