Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15335

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15330 and CSW01_15335 are separated by 143 nucleotidesCSW01_15335 and CSW01_15340 are separated by 36 nucleotides CSW01_15330: CSW01_15330 - glycine dehydrogenase (decarboxylating), at 292,439 to 295,303 _15330 CSW01_15335: CSW01_15335 - glycine cleavage system protein H, at 295,447 to 295,827 _15335 CSW01_15340: CSW01_15340 - serine hydroxymethyltransferase, at 295,864 to 297,171 _15340 Position (kb) 295 296Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 294.468 kb on - strand, within CSW01_15330at 294.478 kb on - strand, within CSW01_15330at 294.490 kb on - strand, within CSW01_15330at 294.496 kb on + strand, within CSW01_15330at 294.507 kb on - strand, within CSW01_15330at 294.527 kb on + strand, within CSW01_15330at 294.540 kb on + strand, within CSW01_15330at 294.540 kb on + strand, within CSW01_15330at 294.548 kb on - strand, within CSW01_15330at 294.548 kb on - strand, within CSW01_15330at 294.589 kb on - strand, within CSW01_15330at 294.589 kb on - strand, within CSW01_15330at 294.650 kb on - strand, within CSW01_15330at 294.664 kb on - strand, within CSW01_15330at 294.749 kb on - strand, within CSW01_15330at 294.751 kb on + strand, within CSW01_15330at 294.759 kb on - strand, within CSW01_15330at 294.816 kb on + strand, within CSW01_15330at 294.923 kb on - strand, within CSW01_15330at 294.989 kb on - strand, within CSW01_15330at 295.034 kb on + strandat 295.043 kb on - strandat 295.059 kb on + strandat 295.110 kb on + strandat 295.116 kb on - strandat 295.118 kb on - strandat 295.162 kb on - strandat 295.162 kb on - strandat 295.162 kb on - strandat 295.177 kb on - strandat 295.276 kb on + strandat 295.460 kb on + strandat 295.479 kb on - strandat 295.501 kb on - strand, within CSW01_15335at 295.544 kb on + strand, within CSW01_15335at 295.566 kb on + strand, within CSW01_15335at 295.566 kb on + strand, within CSW01_15335at 295.566 kb on + strand, within CSW01_15335at 295.569 kb on - strand, within CSW01_15335at 295.612 kb on + strand, within CSW01_15335at 295.667 kb on - strand, within CSW01_15335at 295.714 kb on + strand, within CSW01_15335at 295.810 kb on + strandat 295.891 kb on - strandat 295.925 kb on + strandat 295.926 kb on + strandat 295.938 kb on + strandat 295.946 kb on - strandat 295.992 kb on + strandat 296.009 kb on - strand, within CSW01_15340at 296.075 kb on - strand, within CSW01_15340at 296.113 kb on + strand, within CSW01_15340at 296.119 kb on + strand, within CSW01_15340at 296.119 kb on + strand, within CSW01_15340at 296.119 kb on + strand, within CSW01_15340at 296.127 kb on - strand, within CSW01_15340at 296.127 kb on - strand, within CSW01_15340at 296.127 kb on - strand, within CSW01_15340at 296.146 kb on + strand, within CSW01_15340at 296.291 kb on - strand, within CSW01_15340at 296.291 kb on - strand, within CSW01_15340at 296.291 kb on - strand, within CSW01_15340at 296.323 kb on - strand, within CSW01_15340at 296.340 kb on - strand, within CSW01_15340at 296.357 kb on + strand, within CSW01_15340at 296.365 kb on - strand, within CSW01_15340at 296.380 kb on - strand, within CSW01_15340at 296.391 kb on + strand, within CSW01_15340at 296.482 kb on + strand, within CSW01_15340at 296.490 kb on - strand, within CSW01_15340at 296.539 kb on - strand, within CSW01_15340at 296.539 kb on - strand, within CSW01_15340at 296.539 kb on - strand, within CSW01_15340at 296.557 kb on - strand, within CSW01_15340at 296.603 kb on - strand, within CSW01_15340at 296.703 kb on - strand, within CSW01_15340at 296.703 kb on - strand, within CSW01_15340at 296.822 kb on + strand, within CSW01_15340

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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294,468 - CSW01_15330 0.71 -3.0
294,478 - CSW01_15330 0.71 -2.5
294,490 - CSW01_15330 0.72 +0.8
294,496 + CSW01_15330 0.72 -2.0
294,507 - CSW01_15330 0.72 +0.5
294,527 + CSW01_15330 0.73 -0.3
294,540 + CSW01_15330 0.73 +3.2
294,540 + CSW01_15330 0.73 +0.1
294,548 - CSW01_15330 0.74 -1.2
294,548 - CSW01_15330 0.74 +0.1
294,589 - CSW01_15330 0.75 -2.7
294,589 - CSW01_15330 0.75 +0.8
294,650 - CSW01_15330 0.77 +1.4
294,664 - CSW01_15330 0.78 +1.5
294,749 - CSW01_15330 0.81 -1.6
294,751 + CSW01_15330 0.81 -0.7
294,759 - CSW01_15330 0.81 -1.5
294,816 + CSW01_15330 0.83 -0.7
294,923 - CSW01_15330 0.87 -2.5
294,989 - CSW01_15330 0.89 +0.4
295,034 + -3.2
295,043 - -1.0
295,059 + +0.9
295,110 + +2.0
295,116 - -1.2
295,118 - +0.8
295,162 - +1.2
295,162 - -0.7
295,162 - -1.6
295,177 - +0.4
295,276 + -0.7
295,460 + -1.0
295,479 - -1.2
295,501 - CSW01_15335 0.14 +2.1
295,544 + CSW01_15335 0.25 -0.8
295,566 + CSW01_15335 0.31 +1.1
295,566 + CSW01_15335 0.31 +0.3
295,566 + CSW01_15335 0.31 -0.6
295,569 - CSW01_15335 0.32 -1.9
295,612 + CSW01_15335 0.43 -2.9
295,667 - CSW01_15335 0.58 -0.7
295,714 + CSW01_15335 0.70 -2.2
295,810 + -0.2
295,891 - +1.1
295,925 + -2.7
295,926 + +2.0
295,938 + +0.8
295,946 - -2.6
295,992 + +1.4
296,009 - CSW01_15340 0.11 +0.4
296,075 - CSW01_15340 0.16 -1.7
296,113 + CSW01_15340 0.19 -0.0
296,119 + CSW01_15340 0.19 +0.0
296,119 + CSW01_15340 0.19 -1.7
296,119 + CSW01_15340 0.19 +2.1
296,127 - CSW01_15340 0.20 -1.8
296,127 - CSW01_15340 0.20 -0.6
296,127 - CSW01_15340 0.20 -0.2
296,146 + CSW01_15340 0.22 +0.6
296,291 - CSW01_15340 0.33 +0.8
296,291 - CSW01_15340 0.33 +1.8
296,291 - CSW01_15340 0.33 -0.8
296,323 - CSW01_15340 0.35 -2.3
296,340 - CSW01_15340 0.36 +0.8
296,357 + CSW01_15340 0.38 -2.3
296,365 - CSW01_15340 0.38 -3.6
296,380 - CSW01_15340 0.39 -1.3
296,391 + CSW01_15340 0.40 -2.4
296,482 + CSW01_15340 0.47 +0.5
296,490 - CSW01_15340 0.48 -2.2
296,539 - CSW01_15340 0.52 +0.5
296,539 - CSW01_15340 0.52 -1.2
296,539 - CSW01_15340 0.52 +0.2
296,557 - CSW01_15340 0.53 -1.3
296,603 - CSW01_15340 0.56 +0.5
296,703 - CSW01_15340 0.64 -3.9
296,703 - CSW01_15340 0.64 -0.5
296,822 + CSW01_15340 0.73 -0.9

Or see this region's nucleotide sequence