Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14995

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14985 and CSW01_14990 overlap by 4 nucleotidesCSW01_14990 and CSW01_14995 are separated by 67 nucleotidesCSW01_14995 and CSW01_15000 are separated by 43 nucleotidesCSW01_15000 and CSW01_15005 overlap by 26 nucleotidesCSW01_15005 and CSW01_15010 are separated by 148 nucleotides CSW01_14985: CSW01_14985 - DUF3696 domain-containing protein, at 217,753 to 218,877 _14985 CSW01_14990: CSW01_14990 - hypothetical protein, at 218,874 to 219,752 _14990 CSW01_14995: CSW01_14995 - IS200/IS605 family transposase IS1004, at 219,820 to 220,257 _14995 CSW01_15000: CSW01_15000 - rfbP protein, at 220,301 to 220,414 _15000 CSW01_15005: CSW01_15005 - HNH endonuclease, at 220,389 to 220,613 _15005 CSW01_15010: CSW01_15010 - ATP-dependent RNA helicase RhlE, at 220,762 to 222,117 _15010 Position (kb) 219 220 221Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 218.836 kb on + strandat 218.844 kb on - strandat 218.876 kb on - strandat 218.876 kb on - strandat 218.905 kb on + strandat 218.913 kb on - strandat 218.913 kb on - strandat 218.929 kb on + strandat 218.929 kb on + strandat 218.929 kb on + strandat 218.929 kb on - strandat 218.937 kb on - strandat 218.985 kb on + strand, within CSW01_14990at 218.993 kb on - strand, within CSW01_14990at 218.995 kb on + strand, within CSW01_14990at 219.002 kb on + strand, within CSW01_14990at 219.002 kb on + strand, within CSW01_14990at 219.002 kb on + strand, within CSW01_14990at 219.003 kb on - strand, within CSW01_14990at 219.010 kb on - strand, within CSW01_14990at 219.012 kb on + strand, within CSW01_14990at 219.012 kb on + strand, within CSW01_14990at 219.020 kb on - strand, within CSW01_14990at 219.045 kb on - strand, within CSW01_14990at 219.101 kb on - strand, within CSW01_14990at 219.217 kb on + strand, within CSW01_14990at 219.217 kb on + strand, within CSW01_14990at 219.246 kb on - strand, within CSW01_14990at 219.246 kb on - strand, within CSW01_14990at 219.246 kb on - strand, within CSW01_14990at 219.281 kb on + strand, within CSW01_14990at 219.327 kb on + strand, within CSW01_14990at 219.347 kb on + strand, within CSW01_14990at 219.396 kb on + strand, within CSW01_14990at 219.396 kb on + strand, within CSW01_14990at 219.396 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.397 kb on + strand, within CSW01_14990at 219.404 kb on + strand, within CSW01_14990at 219.404 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.405 kb on - strand, within CSW01_14990at 219.460 kb on - strand, within CSW01_14990at 219.519 kb on + strand, within CSW01_14990at 219.536 kb on - strand, within CSW01_14990at 219.536 kb on - strand, within CSW01_14990at 219.538 kb on + strand, within CSW01_14990at 219.538 kb on + strand, within CSW01_14990at 219.538 kb on - strand, within CSW01_14990at 219.546 kb on - strand, within CSW01_14990at 219.546 kb on - strand, within CSW01_14990at 219.548 kb on + strand, within CSW01_14990at 219.548 kb on + strand, within CSW01_14990at 219.548 kb on + strand, within CSW01_14990at 219.548 kb on + strand, within CSW01_14990at 219.548 kb on + strand, within CSW01_14990at 219.548 kb on + strand, within CSW01_14990at 219.548 kb on + strand, within CSW01_14990at 219.551 kb on - strand, within CSW01_14990at 219.554 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.556 kb on - strand, within CSW01_14990at 219.721 kb on - strandat 220.388 kb on + strand, within CSW01_15000at 220.408 kb on + strandat 220.421 kb on + strand, within CSW01_15005at 220.443 kb on + strand, within CSW01_15005at 220.560 kb on + strand, within CSW01_15005at 220.626 kb on + strandat 220.725 kb on + strandat 220.891 kb on + strandat 220.899 kb on - strand, within CSW01_15010at 221.098 kb on + strand, within CSW01_15010at 221.121 kb on + strand, within CSW01_15010at 221.246 kb on - strand, within CSW01_15010

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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218,836 + -2.8
218,844 - -1.1
218,876 - +0.5
218,876 - -0.4
218,905 + +0.5
218,913 - -2.7
218,913 - -2.9
218,929 + +0.9
218,929 + +0.3
218,929 + +1.9
218,929 - -3.5
218,937 - -2.0
218,985 + CSW01_14990 0.13 +1.2
218,993 - CSW01_14990 0.14 +0.8
218,995 + CSW01_14990 0.14 +0.8
219,002 + CSW01_14990 0.15 -3.3
219,002 + CSW01_14990 0.15 +0.1
219,002 + CSW01_14990 0.15 +0.6
219,003 - CSW01_14990 0.15 -0.6
219,010 - CSW01_14990 0.15 -3.2
219,012 + CSW01_14990 0.16 +1.2
219,012 + CSW01_14990 0.16 +0.1
219,020 - CSW01_14990 0.17 -0.3
219,045 - CSW01_14990 0.19 -3.0
219,101 - CSW01_14990 0.26 -0.8
219,217 + CSW01_14990 0.39 -0.6
219,217 + CSW01_14990 0.39 +0.2
219,246 - CSW01_14990 0.42 -2.4
219,246 - CSW01_14990 0.42 +0.2
219,246 - CSW01_14990 0.42 -0.8
219,281 + CSW01_14990 0.46 -2.6
219,327 + CSW01_14990 0.52 +0.5
219,347 + CSW01_14990 0.54 -3.0
219,396 + CSW01_14990 0.59 -1.1
219,396 + CSW01_14990 0.59 +0.5
219,396 + CSW01_14990 0.59 -0.3
219,397 + CSW01_14990 0.59 -1.3
219,397 + CSW01_14990 0.59 -0.6
219,397 + CSW01_14990 0.59 -0.9
219,397 + CSW01_14990 0.59 -0.4
219,397 + CSW01_14990 0.59 +0.9
219,397 + CSW01_14990 0.59 -0.7
219,397 + CSW01_14990 0.59 -0.9
219,397 + CSW01_14990 0.59 +0.7
219,397 + CSW01_14990 0.59 -0.6
219,397 + CSW01_14990 0.59 +0.2
219,397 + CSW01_14990 0.59 +1.1
219,397 + CSW01_14990 0.59 +1.4
219,397 + CSW01_14990 0.59 +1.4
219,397 + CSW01_14990 0.59 -1.5
219,397 + CSW01_14990 0.59 -2.0
219,397 + CSW01_14990 0.59 -2.0
219,397 + CSW01_14990 0.59 -1.3
219,397 + CSW01_14990 0.59 +0.3
219,404 + CSW01_14990 0.60 +0.8
219,404 - CSW01_14990 0.60 +0.9
219,405 - CSW01_14990 0.60 -2.7
219,405 - CSW01_14990 0.60 -0.9
219,405 - CSW01_14990 0.60 -3.3
219,405 - CSW01_14990 0.60 -4.0
219,405 - CSW01_14990 0.60 +0.3
219,405 - CSW01_14990 0.60 -1.7
219,405 - CSW01_14990 0.60 +0.3
219,405 - CSW01_14990 0.60 -3.7
219,405 - CSW01_14990 0.60 -0.0
219,405 - CSW01_14990 0.60 -0.9
219,460 - CSW01_14990 0.67 -3.5
219,519 + CSW01_14990 0.73 -1.2
219,536 - CSW01_14990 0.75 +0.4
219,536 - CSW01_14990 0.75 -0.4
219,538 + CSW01_14990 0.76 -2.7
219,538 + CSW01_14990 0.76 -2.9
219,538 - CSW01_14990 0.76 -1.5
219,546 - CSW01_14990 0.76 -1.9
219,546 - CSW01_14990 0.76 -0.7
219,548 + CSW01_14990 0.77 -0.3
219,548 + CSW01_14990 0.77 -2.6
219,548 + CSW01_14990 0.77 +0.9
219,548 + CSW01_14990 0.77 +1.4
219,548 + CSW01_14990 0.77 +0.2
219,548 + CSW01_14990 0.77 +1.3
219,548 + CSW01_14990 0.77 +0.1
219,551 - CSW01_14990 0.77 -2.4
219,554 - CSW01_14990 0.77 -2.6
219,556 - CSW01_14990 0.78 +1.0
219,556 - CSW01_14990 0.78 +0.7
219,556 - CSW01_14990 0.78 -1.1
219,556 - CSW01_14990 0.78 +0.1
219,556 - CSW01_14990 0.78 -2.2
219,556 - CSW01_14990 0.78 +0.0
219,556 - CSW01_14990 0.78 -1.3
219,556 - CSW01_14990 0.78 -2.9
219,556 - CSW01_14990 0.78 -2.4
219,556 - CSW01_14990 0.78 +1.1
219,556 - CSW01_14990 0.78 -4.0
219,556 - CSW01_14990 0.78 +0.7
219,556 - CSW01_14990 0.78 -1.3
219,556 - CSW01_14990 0.78 -1.1
219,556 - CSW01_14990 0.78 -2.6
219,556 - CSW01_14990 0.78 -1.0
219,556 - CSW01_14990 0.78 -1.6
219,556 - CSW01_14990 0.78 +0.6
219,721 - +1.2
220,388 + CSW01_15000 0.76 +0.9
220,408 + -0.3
220,421 + CSW01_15005 0.14 +0.9
220,443 + CSW01_15005 0.24 -0.3
220,560 + CSW01_15005 0.76 +0.8
220,626 + -0.8
220,725 + +1.2
220,891 + +0.0
220,899 - CSW01_15010 0.10 -0.1
221,098 + CSW01_15010 0.25 -1.0
221,121 + CSW01_15010 0.26 -0.8
221,246 - CSW01_15010 0.36 +0.8

Or see this region's nucleotide sequence