Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14605

Experiment: ICP3_phage_411_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_14600 and CSW01_14605 overlap by 31 nucleotidesCSW01_14605 and CSW01_14610 are separated by 9 nucleotides CSW01_14600: CSW01_14600 - AAA family ATPase, at 128,788 to 130,380 _14600 CSW01_14605: CSW01_14605 - type VI secretion system-associated protein TagO, at 130,350 to 131,033 _14605 CSW01_14610: CSW01_14610 - type VI secretion system protein TssA, at 131,043 to 132,452 _14610 Position (kb) 130 131 132Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 129.437 kb on - strand, within CSW01_14600at 129.447 kb on + strand, within CSW01_14600at 129.477 kb on - strand, within CSW01_14600at 129.477 kb on - strand, within CSW01_14600at 129.509 kb on + strand, within CSW01_14600at 129.533 kb on + strand, within CSW01_14600at 129.636 kb on + strand, within CSW01_14600at 129.735 kb on + strand, within CSW01_14600at 129.743 kb on - strand, within CSW01_14600at 129.766 kb on - strand, within CSW01_14600at 129.766 kb on - strand, within CSW01_14600at 129.808 kb on - strand, within CSW01_14600at 129.845 kb on - strand, within CSW01_14600at 129.896 kb on + strand, within CSW01_14600at 129.896 kb on + strand, within CSW01_14600at 129.904 kb on - strand, within CSW01_14600at 129.918 kb on + strand, within CSW01_14600at 129.961 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.994 kb on + strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 130.047 kb on - strand, within CSW01_14600at 130.074 kb on + strand, within CSW01_14600at 130.082 kb on - strand, within CSW01_14600at 130.082 kb on - strand, within CSW01_14600at 130.082 kb on - strand, within CSW01_14600at 130.083 kb on - strand, within CSW01_14600at 130.083 kb on - strand, within CSW01_14600at 130.108 kb on + strand, within CSW01_14600at 130.113 kb on + strand, within CSW01_14600at 130.113 kb on + strand, within CSW01_14600at 130.113 kb on + strand, within CSW01_14600at 130.116 kb on - strand, within CSW01_14600at 130.118 kb on + strand, within CSW01_14600at 130.281 kb on - strandat 130.342 kb on + strandat 130.350 kb on - strandat 130.365 kb on + strandat 130.433 kb on + strand, within CSW01_14605at 130.479 kb on + strand, within CSW01_14605at 130.503 kb on + strand, within CSW01_14605at 130.545 kb on + strand, within CSW01_14605at 130.571 kb on + strand, within CSW01_14605at 130.571 kb on + strand, within CSW01_14605at 130.571 kb on + strand, within CSW01_14605at 130.571 kb on + strand, within CSW01_14605at 130.579 kb on - strand, within CSW01_14605at 130.579 kb on - strand, within CSW01_14605at 130.579 kb on - strand, within CSW01_14605at 130.598 kb on - strand, within CSW01_14605at 130.628 kb on + strand, within CSW01_14605at 130.628 kb on + strand, within CSW01_14605at 130.660 kb on + strand, within CSW01_14605at 130.668 kb on - strand, within CSW01_14605at 130.719 kb on - strand, within CSW01_14605at 131.179 kb on + strandat 131.179 kb on + strandat 131.187 kb on - strand, within CSW01_14610at 131.187 kb on - strand, within CSW01_14610at 131.199 kb on + strand, within CSW01_14610at 131.212 kb on + strand, within CSW01_14610at 131.220 kb on - strand, within CSW01_14610at 131.234 kb on + strand, within CSW01_14610at 131.242 kb on - strand, within CSW01_14610at 131.361 kb on - strand, within CSW01_14610at 131.496 kb on + strand, within CSW01_14610at 131.544 kb on - strand, within CSW01_14610at 131.551 kb on + strand, within CSW01_14610at 131.551 kb on + strand, within CSW01_14610at 131.552 kb on + strand, within CSW01_14610at 131.559 kb on - strand, within CSW01_14610at 131.561 kb on + strand, within CSW01_14610at 131.562 kb on - strand, within CSW01_14610at 131.587 kb on + strand, within CSW01_14610at 131.587 kb on - strand, within CSW01_14610at 131.592 kb on + strand, within CSW01_14610at 131.592 kb on + strand, within CSW01_14610at 131.595 kb on - strand, within CSW01_14610at 131.595 kb on - strand, within CSW01_14610at 131.613 kb on + strand, within CSW01_14610at 131.621 kb on - strand, within CSW01_14610at 131.631 kb on - strand, within CSW01_14610at 131.644 kb on - strand, within CSW01_14610at 131.654 kb on + strand, within CSW01_14610at 131.662 kb on - strand, within CSW01_14610at 131.669 kb on + strand, within CSW01_14610at 131.671 kb on + strand, within CSW01_14610at 131.679 kb on - strand, within CSW01_14610at 131.706 kb on + strand, within CSW01_14610at 131.772 kb on + strand, within CSW01_14610at 131.782 kb on + strand, within CSW01_14610at 131.795 kb on + strand, within CSW01_14610at 131.798 kb on - strand, within CSW01_14610at 131.798 kb on - strand, within CSW01_14610at 131.800 kb on + strand, within CSW01_14610at 131.808 kb on - strand, within CSW01_14610at 131.873 kb on + strand, within CSW01_14610at 131.881 kb on - strand, within CSW01_14610at 131.881 kb on - strand, within CSW01_14610at 131.930 kb on + strand, within CSW01_14610at 131.930 kb on + strand, within CSW01_14610at 131.930 kb on - strand, within CSW01_14610at 131.930 kb on - strand, within CSW01_14610at 131.938 kb on - strand, within CSW01_14610at 132.004 kb on - strand, within CSW01_14610

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
remove
129,437 - CSW01_14600 0.41 -1.6
129,447 + CSW01_14600 0.41 +0.0
129,477 - CSW01_14600 0.43 +3.7
129,477 - CSW01_14600 0.43 +1.7
129,509 + CSW01_14600 0.45 -3.0
129,533 + CSW01_14600 0.47 +1.9
129,636 + CSW01_14600 0.53 -1.7
129,735 + CSW01_14600 0.59 +0.6
129,743 - CSW01_14600 0.60 +2.1
129,766 - CSW01_14600 0.61 +2.7
129,766 - CSW01_14600 0.61 -3.5
129,808 - CSW01_14600 0.64 -0.1
129,845 - CSW01_14600 0.66 +1.2
129,896 + CSW01_14600 0.70 -1.7
129,896 + CSW01_14600 0.70 -3.1
129,904 - CSW01_14600 0.70 +1.3
129,918 + CSW01_14600 0.71 -0.5
129,961 + CSW01_14600 0.74 -0.7
129,986 + CSW01_14600 0.75 -0.1
129,986 + CSW01_14600 0.75 +1.0
129,986 + CSW01_14600 0.75 +0.4
129,986 + CSW01_14600 0.75 +0.2
129,986 + CSW01_14600 0.75 +3.3
129,986 + CSW01_14600 0.75 -0.9
129,986 + CSW01_14600 0.75 +1.5
129,986 + CSW01_14600 0.75 -1.8
129,986 + CSW01_14600 0.75 -2.7
129,986 + CSW01_14600 0.75 +1.7
129,986 + CSW01_14600 0.75 +1.2
129,994 + CSW01_14600 0.76 +1.3
129,994 - CSW01_14600 0.76 -0.2
129,994 - CSW01_14600 0.76 -1.0
129,994 - CSW01_14600 0.76 +0.9
129,994 - CSW01_14600 0.76 -0.4
129,994 - CSW01_14600 0.76 -1.3
129,994 - CSW01_14600 0.76 -2.3
129,994 - CSW01_14600 0.76 -1.7
129,994 - CSW01_14600 0.76 +0.3
129,994 - CSW01_14600 0.76 -0.2
129,994 - CSW01_14600 0.76 +0.0
130,047 - CSW01_14600 0.79 -3.4
130,074 + CSW01_14600 0.81 -0.8
130,082 - CSW01_14600 0.81 +0.5
130,082 - CSW01_14600 0.81 -2.9
130,082 - CSW01_14600 0.81 -3.1
130,083 - CSW01_14600 0.81 +1.4
130,083 - CSW01_14600 0.81 -1.8
130,108 + CSW01_14600 0.83 +0.6
130,113 + CSW01_14600 0.83 +0.5
130,113 + CSW01_14600 0.83 +0.1
130,113 + CSW01_14600 0.83 -0.5
130,116 - CSW01_14600 0.83 +0.7
130,118 + CSW01_14600 0.83 +1.2
130,281 - +1.4
130,342 + +0.4
130,350 - -1.7
130,365 + +0.8
130,433 + CSW01_14605 0.12 -0.8
130,479 + CSW01_14605 0.19 -3.0
130,503 + CSW01_14605 0.22 -1.7
130,545 + CSW01_14605 0.29 -1.1
130,571 + CSW01_14605 0.32 +0.5
130,571 + CSW01_14605 0.32 +1.1
130,571 + CSW01_14605 0.32 -3.6
130,571 + CSW01_14605 0.32 +0.3
130,579 - CSW01_14605 0.33 -1.2
130,579 - CSW01_14605 0.33 -2.2
130,579 - CSW01_14605 0.33 -2.1
130,598 - CSW01_14605 0.36 +1.3
130,628 + CSW01_14605 0.41 -0.3
130,628 + CSW01_14605 0.41 -3.1
130,660 + CSW01_14605 0.45 -1.0
130,668 - CSW01_14605 0.46 -1.7
130,719 - CSW01_14605 0.54 -0.7
131,179 + +0.7
131,179 + +0.1
131,187 - CSW01_14610 0.10 -1.0
131,187 - CSW01_14610 0.10 +0.7
131,199 + CSW01_14610 0.11 -2.6
131,212 + CSW01_14610 0.12 +0.2
131,220 - CSW01_14610 0.13 +1.5
131,234 + CSW01_14610 0.14 +0.6
131,242 - CSW01_14610 0.14 +1.6
131,361 - CSW01_14610 0.23 +0.7
131,496 + CSW01_14610 0.32 -3.4
131,544 - CSW01_14610 0.36 +1.3
131,551 + CSW01_14610 0.36 +2.4
131,551 + CSW01_14610 0.36 +1.2
131,552 + CSW01_14610 0.36 +0.9
131,559 - CSW01_14610 0.37 +1.0
131,561 + CSW01_14610 0.37 +0.6
131,562 - CSW01_14610 0.37 +1.4
131,587 + CSW01_14610 0.39 +0.6
131,587 - CSW01_14610 0.39 +1.0
131,592 + CSW01_14610 0.39 +1.7
131,592 + CSW01_14610 0.39 +1.6
131,595 - CSW01_14610 0.39 -0.6
131,595 - CSW01_14610 0.39 -1.3
131,613 + CSW01_14610 0.40 -0.8
131,621 - CSW01_14610 0.41 -0.6
131,631 - CSW01_14610 0.42 +0.4
131,644 - CSW01_14610 0.43 -0.4
131,654 + CSW01_14610 0.43 -0.1
131,662 - CSW01_14610 0.44 -2.1
131,669 + CSW01_14610 0.44 -1.1
131,671 + CSW01_14610 0.45 -0.0
131,679 - CSW01_14610 0.45 -1.8
131,706 + CSW01_14610 0.47 +0.5
131,772 + CSW01_14610 0.52 -1.5
131,782 + CSW01_14610 0.52 +1.3
131,795 + CSW01_14610 0.53 +1.6
131,798 - CSW01_14610 0.54 -1.6
131,798 - CSW01_14610 0.54 +0.3
131,800 + CSW01_14610 0.54 -1.8
131,808 - CSW01_14610 0.54 -2.3
131,873 + CSW01_14610 0.59 -0.7
131,881 - CSW01_14610 0.59 +1.2
131,881 - CSW01_14610 0.59 +0.7
131,930 + CSW01_14610 0.63 -0.3
131,930 + CSW01_14610 0.63 +1.0
131,930 - CSW01_14610 0.63 -2.5
131,930 - CSW01_14610 0.63 -0.3
131,938 - CSW01_14610 0.63 +1.0
132,004 - CSW01_14610 0.68 -3.8

Or see this region's nucleotide sequence