Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14420

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14410 and CSW01_14415 are separated by 304 nucleotidesCSW01_14415 and CSW01_14420 are separated by 191 nucleotidesCSW01_14420 and CSW01_14425 are separated by 117 nucleotides CSW01_14410: CSW01_14410 - sodium-independent anion transporter, at 86,657 to 88,318 _14410 CSW01_14415: CSW01_14415 - 1,4-alpha-glucan branching protein, at 88,623 to 88,955 _14415 CSW01_14420: CSW01_14420 - peptidase M23, at 89,147 to 90,439 _14420 CSW01_14425: CSW01_14425 - GGDEF domain-containing protein, at 90,557 to 92,380 _14425 Position (kb) 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 88.275 kb on + strandat 88.381 kb on + strandat 88.393 kb on - strandat 88.491 kb on + strandat 88.874 kb on - strand, within CSW01_14415at 88.997 kb on + strandat 88.997 kb on + strandat 88.997 kb on + strandat 88.997 kb on + strandat 89.083 kb on + strandat 89.110 kb on - strandat 89.110 kb on - strandat 89.122 kb on - strandat 89.262 kb on - strandat 89.267 kb on + strandat 89.322 kb on - strand, within CSW01_14420at 89.334 kb on + strand, within CSW01_14420at 89.334 kb on + strand, within CSW01_14420at 89.352 kb on - strand, within CSW01_14420at 89.352 kb on - strand, within CSW01_14420at 89.372 kb on + strand, within CSW01_14420at 89.395 kb on + strand, within CSW01_14420at 89.494 kb on + strand, within CSW01_14420at 89.576 kb on + strand, within CSW01_14420at 89.584 kb on - strand, within CSW01_14420at 89.908 kb on + strand, within CSW01_14420at 90.010 kb on - strand, within CSW01_14420at 90.071 kb on + strand, within CSW01_14420at 90.071 kb on + strand, within CSW01_14420at 90.071 kb on + strand, within CSW01_14420at 90.081 kb on + strand, within CSW01_14420at 90.176 kb on + strand, within CSW01_14420at 90.350 kb on - strandat 90.378 kb on - strandat 90.400 kb on + strandat 90.602 kb on + strandat 90.660 kb on + strandat 90.668 kb on - strandat 90.682 kb on + strandat 90.774 kb on + strand, within CSW01_14425at 90.842 kb on + strand, within CSW01_14425at 90.846 kb on - strand, within CSW01_14425at 90.924 kb on + strand, within CSW01_14425at 90.924 kb on + strand, within CSW01_14425at 90.924 kb on + strand, within CSW01_14425at 90.932 kb on - strand, within CSW01_14425at 90.952 kb on + strand, within CSW01_14425at 90.960 kb on - strand, within CSW01_14425at 91.158 kb on - strand, within CSW01_14425at 91.278 kb on + strand, within CSW01_14425at 91.286 kb on - strand, within CSW01_14425at 91.286 kb on - strand, within CSW01_14425at 91.286 kb on - strand, within CSW01_14425at 91.286 kb on - strand, within CSW01_14425at 91.313 kb on - strand, within CSW01_14425

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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88,275 + +0.1
88,381 + -1.5
88,393 - +0.8
88,491 + -0.9
88,874 - CSW01_14415 0.75 -0.0
88,997 + -3.1
88,997 + -0.3
88,997 + -1.7
88,997 + +0.4
89,083 + +1.3
89,110 - -0.3
89,110 - -2.8
89,122 - -0.2
89,262 - -3.5
89,267 + +1.8
89,322 - CSW01_14420 0.14 +0.6
89,334 + CSW01_14420 0.14 -2.2
89,334 + CSW01_14420 0.14 +2.0
89,352 - CSW01_14420 0.16 -1.7
89,352 - CSW01_14420 0.16 -0.7
89,372 + CSW01_14420 0.17 -0.1
89,395 + CSW01_14420 0.19 +0.2
89,494 + CSW01_14420 0.27 -1.5
89,576 + CSW01_14420 0.33 +1.5
89,584 - CSW01_14420 0.34 +0.2
89,908 + CSW01_14420 0.59 -0.0
90,010 - CSW01_14420 0.67 -0.9
90,071 + CSW01_14420 0.71 -2.1
90,071 + CSW01_14420 0.71 -1.6
90,071 + CSW01_14420 0.71 +0.9
90,081 + CSW01_14420 0.72 -1.3
90,176 + CSW01_14420 0.80 -0.7
90,350 - +0.0
90,378 - +0.4
90,400 + -0.6
90,602 + -1.1
90,660 + +1.9
90,668 - -0.4
90,682 + +1.8
90,774 + CSW01_14425 0.12 -2.0
90,842 + CSW01_14425 0.16 +1.1
90,846 - CSW01_14425 0.16 +1.0
90,924 + CSW01_14425 0.20 -0.2
90,924 + CSW01_14425 0.20 -0.0
90,924 + CSW01_14425 0.20 -1.0
90,932 - CSW01_14425 0.21 +0.5
90,952 + CSW01_14425 0.22 +2.0
90,960 - CSW01_14425 0.22 +0.3
91,158 - CSW01_14425 0.33 +1.1
91,278 + CSW01_14425 0.40 +0.0
91,286 - CSW01_14425 0.40 -2.1
91,286 - CSW01_14425 0.40 -3.1
91,286 - CSW01_14425 0.40 -0.7
91,286 - CSW01_14425 0.40 -2.7
91,313 - CSW01_14425 0.41 +0.8

Or see this region's nucleotide sequence