Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14355

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14350 and CSW01_14355 overlap by 4 nucleotidesCSW01_14355 and CSW01_14360 overlap by 4 nucleotidesCSW01_14360 and CSW01_14365 are separated by 133 nucleotides CSW01_14350: CSW01_14350 - proconvertase P-domain protein, at 73,022 to 75,328 _14350 CSW01_14355: CSW01_14355 - DUF1566 domain-containing protein, at 75,325 to 76,767 _14355 CSW01_14360: CSW01_14360 - DUF1566 domain-containing protein, at 76,764 to 77,324 _14360 CSW01_14365: CSW01_14365 - methyl-accepting chemotaxis protein, at 77,458 to 79,101 _14365 Position (kb) 75 76 77Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 74.325 kb on + strand, within CSW01_14350at 74.326 kb on - strand, within CSW01_14350at 74.328 kb on - strand, within CSW01_14350at 74.328 kb on - strand, within CSW01_14350at 74.333 kb on + strand, within CSW01_14350at 74.469 kb on - strand, within CSW01_14350at 74.528 kb on + strand, within CSW01_14350at 74.584 kb on + strand, within CSW01_14350at 74.590 kb on - strand, within CSW01_14350at 74.592 kb on - strand, within CSW01_14350at 74.626 kb on + strand, within CSW01_14350at 74.727 kb on - strand, within CSW01_14350at 74.727 kb on - strand, within CSW01_14350at 74.803 kb on - strand, within CSW01_14350at 74.807 kb on + strand, within CSW01_14350at 74.845 kb on + strand, within CSW01_14350at 74.906 kb on + strand, within CSW01_14350at 75.254 kb on - strandat 75.265 kb on - strandat 75.303 kb on + strandat 75.340 kb on + strandat 75.396 kb on + strandat 75.427 kb on + strandat 75.526 kb on - strand, within CSW01_14355at 75.661 kb on + strand, within CSW01_14355at 75.661 kb on + strand, within CSW01_14355at 75.669 kb on - strand, within CSW01_14355at 75.671 kb on - strand, within CSW01_14355at 75.694 kb on + strand, within CSW01_14355at 75.788 kb on - strand, within CSW01_14355at 75.971 kb on + strand, within CSW01_14355at 75.981 kb on + strand, within CSW01_14355at 75.989 kb on - strand, within CSW01_14355at 76.041 kb on + strand, within CSW01_14355at 76.163 kb on - strand, within CSW01_14355at 76.181 kb on - strand, within CSW01_14355at 76.193 kb on + strand, within CSW01_14355at 76.206 kb on - strand, within CSW01_14355at 76.206 kb on - strand, within CSW01_14355at 76.244 kb on - strand, within CSW01_14355at 76.320 kb on + strand, within CSW01_14355at 76.384 kb on + strand, within CSW01_14355at 76.397 kb on - strand, within CSW01_14355at 76.412 kb on - strand, within CSW01_14355at 76.451 kb on + strand, within CSW01_14355at 76.451 kb on + strand, within CSW01_14355at 76.451 kb on + strand, within CSW01_14355at 76.451 kb on + strand, within CSW01_14355at 76.451 kb on + strand, within CSW01_14355at 76.451 kb on + strand, within CSW01_14355at 76.451 kb on + strand, within CSW01_14355at 76.459 kb on - strand, within CSW01_14355at 76.459 kb on - strand, within CSW01_14355at 76.459 kb on - strand, within CSW01_14355at 76.459 kb on - strand, within CSW01_14355at 76.468 kb on - strand, within CSW01_14355at 76.503 kb on + strand, within CSW01_14355at 76.641 kb on + strandat 76.657 kb on + strandat 76.679 kb on + strandat 76.689 kb on + strandat 76.797 kb on + strandat 76.805 kb on - strandat 76.818 kb on + strandat 76.888 kb on + strand, within CSW01_14360at 76.890 kb on + strand, within CSW01_14360at 76.908 kb on + strand, within CSW01_14360at 76.908 kb on + strand, within CSW01_14360at 76.908 kb on + strand, within CSW01_14360at 76.916 kb on - strand, within CSW01_14360at 76.943 kb on + strand, within CSW01_14360at 76.966 kb on + strand, within CSW01_14360at 76.966 kb on + strand, within CSW01_14360at 76.971 kb on + strand, within CSW01_14360at 76.971 kb on + strand, within CSW01_14360at 76.974 kb on - strand, within CSW01_14360at 76.984 kb on - strand, within CSW01_14360at 76.991 kb on - strand, within CSW01_14360at 76.993 kb on + strand, within CSW01_14360at 77.047 kb on + strand, within CSW01_14360at 77.055 kb on - strand, within CSW01_14360at 77.065 kb on + strand, within CSW01_14360at 77.073 kb on - strand, within CSW01_14360at 77.204 kb on + strand, within CSW01_14360at 77.204 kb on + strand, within CSW01_14360at 77.204 kb on + strand, within CSW01_14360at 77.235 kb on + strand, within CSW01_14360at 77.414 kb on + strandat 77.414 kb on + strandat 77.519 kb on - strandat 77.519 kb on - strandat 77.519 kb on - strandat 77.535 kb on + strandat 77.543 kb on - strandat 77.642 kb on + strand, within CSW01_14365at 77.647 kb on + strand, within CSW01_14365at 77.706 kb on - strand, within CSW01_14365at 77.733 kb on + strand, within CSW01_14365at 77.733 kb on + strand, within CSW01_14365at 77.733 kb on + strand, within CSW01_14365at 77.741 kb on - strand, within CSW01_14365at 77.763 kb on - strand, within CSW01_14365

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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74,325 + CSW01_14350 0.56 +2.0
74,326 - CSW01_14350 0.57 -1.1
74,328 - CSW01_14350 0.57 +0.6
74,328 - CSW01_14350 0.57 +0.6
74,333 + CSW01_14350 0.57 +1.2
74,469 - CSW01_14350 0.63 -1.6
74,528 + CSW01_14350 0.65 -1.7
74,584 + CSW01_14350 0.68 +1.7
74,590 - CSW01_14350 0.68 +1.9
74,592 - CSW01_14350 0.68 +1.2
74,626 + CSW01_14350 0.70 +0.2
74,727 - CSW01_14350 0.74 +0.7
74,727 - CSW01_14350 0.74 +2.2
74,803 - CSW01_14350 0.77 +1.2
74,807 + CSW01_14350 0.77 +1.0
74,845 + CSW01_14350 0.79 -0.8
74,906 + CSW01_14350 0.82 +0.5
75,254 - -0.4
75,265 - +1.2
75,303 + +0.0
75,340 + -0.2
75,396 + +1.0
75,427 + +1.4
75,526 - CSW01_14355 0.14 -2.2
75,661 + CSW01_14355 0.23 +1.5
75,661 + CSW01_14355 0.23 +0.7
75,669 - CSW01_14355 0.24 +0.4
75,671 - CSW01_14355 0.24 -0.7
75,694 + CSW01_14355 0.26 +1.0
75,788 - CSW01_14355 0.32 -0.3
75,971 + CSW01_14355 0.45 -1.5
75,981 + CSW01_14355 0.45 -0.0
75,989 - CSW01_14355 0.46 +1.8
76,041 + CSW01_14355 0.50 +0.7
76,163 - CSW01_14355 0.58 -3.9
76,181 - CSW01_14355 0.59 -2.2
76,193 + CSW01_14355 0.60 +0.8
76,206 - CSW01_14355 0.61 -1.1
76,206 - CSW01_14355 0.61 +0.1
76,244 - CSW01_14355 0.64 +0.3
76,320 + CSW01_14355 0.69 +1.7
76,384 + CSW01_14355 0.73 +0.6
76,397 - CSW01_14355 0.74 -2.1
76,412 - CSW01_14355 0.75 +1.3
76,451 + CSW01_14355 0.78 -1.4
76,451 + CSW01_14355 0.78 -0.2
76,451 + CSW01_14355 0.78 +0.4
76,451 + CSW01_14355 0.78 +1.2
76,451 + CSW01_14355 0.78 -1.7
76,451 + CSW01_14355 0.78 -0.5
76,451 + CSW01_14355 0.78 -3.7
76,459 - CSW01_14355 0.79 -0.0
76,459 - CSW01_14355 0.79 +0.0
76,459 - CSW01_14355 0.79 +1.1
76,459 - CSW01_14355 0.79 +1.0
76,468 - CSW01_14355 0.79 +0.4
76,503 + CSW01_14355 0.82 -2.3
76,641 + -1.0
76,657 + +0.9
76,679 + -2.0
76,689 + +1.0
76,797 + +1.4
76,805 - -0.3
76,818 + +0.9
76,888 + CSW01_14360 0.22 +1.0
76,890 + CSW01_14360 0.22 +2.1
76,908 + CSW01_14360 0.26 -1.6
76,908 + CSW01_14360 0.26 -1.2
76,908 + CSW01_14360 0.26 -1.3
76,916 - CSW01_14360 0.27 -0.0
76,943 + CSW01_14360 0.32 +0.6
76,966 + CSW01_14360 0.36 +0.7
76,966 + CSW01_14360 0.36 +0.9
76,971 + CSW01_14360 0.37 +1.1
76,971 + CSW01_14360 0.37 +0.6
76,974 - CSW01_14360 0.37 +0.1
76,984 - CSW01_14360 0.39 +0.3
76,991 - CSW01_14360 0.40 +0.4
76,993 + CSW01_14360 0.41 -2.7
77,047 + CSW01_14360 0.50 -0.2
77,055 - CSW01_14360 0.52 -1.0
77,065 + CSW01_14360 0.54 -0.1
77,073 - CSW01_14360 0.55 +0.6
77,204 + CSW01_14360 0.78 -1.5
77,204 + CSW01_14360 0.78 +0.2
77,204 + CSW01_14360 0.78 -0.5
77,235 + CSW01_14360 0.84 -2.1
77,414 + +1.7
77,414 + +1.1
77,519 - +1.3
77,519 - -3.1
77,519 - +1.5
77,535 + +0.8
77,543 - +0.2
77,642 + CSW01_14365 0.11 -0.9
77,647 + CSW01_14365 0.11 -1.1
77,706 - CSW01_14365 0.15 -0.7
77,733 + CSW01_14365 0.17 -3.6
77,733 + CSW01_14365 0.17 +1.9
77,733 + CSW01_14365 0.17 +1.3
77,741 - CSW01_14365 0.17 +0.8
77,763 - CSW01_14365 0.19 +1.4

Or see this region's nucleotide sequence