Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14235

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14230 and CSW01_14235 are separated by 340 nucleotidesCSW01_14235 and CSW01_14240 are separated by 13 nucleotidesCSW01_14240 and CSW01_14245 overlap by 4 nucleotides CSW01_14230: CSW01_14230 - serine/threonine transporter SstT, at 44,079 to 45,296 _14230 CSW01_14235: CSW01_14235 - copper chaperone PCu(A)C, at 45,637 to 46,089 _14235 CSW01_14240: CSW01_14240 - SCO family protein, at 46,103 to 46,684 _14240 CSW01_14245: CSW01_14245 - hypothetical protein, at 46,681 to 47,103 _14245 Position (kb) 45 46 47Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 44.817 kb on - strand, within CSW01_14230at 44.826 kb on + strand, within CSW01_14230at 44.826 kb on + strand, within CSW01_14230at 44.914 kb on + strand, within CSW01_14230at 44.914 kb on + strand, within CSW01_14230at 44.934 kb on + strand, within CSW01_14230at 44.972 kb on + strand, within CSW01_14230at 44.980 kb on - strand, within CSW01_14230at 45.012 kb on + strand, within CSW01_14230at 45.022 kb on + strand, within CSW01_14230at 45.022 kb on + strand, within CSW01_14230at 45.128 kb on - strand, within CSW01_14230at 45.298 kb on + strandat 45.344 kb on + strandat 45.350 kb on + strandat 45.506 kb on - strandat 45.506 kb on - strandat 45.579 kb on - strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.595 kb on + strandat 45.603 kb on + strandat 45.603 kb on - strandat 45.603 kb on - strandat 45.639 kb on + strandat 45.642 kb on - strandat 45.647 kb on - strandat 45.649 kb on + strandat 45.657 kb on - strandat 45.788 kb on - strand, within CSW01_14235at 45.811 kb on + strand, within CSW01_14235at 45.883 kb on - strand, within CSW01_14235at 45.921 kb on - strand, within CSW01_14235at 45.933 kb on + strand, within CSW01_14235at 45.933 kb on + strand, within CSW01_14235at 46.033 kb on + strand, within CSW01_14235at 46.213 kb on + strand, within CSW01_14240at 46.221 kb on - strand, within CSW01_14240at 46.229 kb on - strand, within CSW01_14240at 46.389 kb on - strand, within CSW01_14240at 46.391 kb on + strand, within CSW01_14240at 46.391 kb on + strand, within CSW01_14240at 46.436 kb on + strand, within CSW01_14240at 46.436 kb on + strand, within CSW01_14240at 46.436 kb on + strand, within CSW01_14240at 46.444 kb on - strand, within CSW01_14240at 46.444 kb on - strand, within CSW01_14240at 46.477 kb on + strand, within CSW01_14240at 46.477 kb on + strand, within CSW01_14240at 46.477 kb on + strand, within CSW01_14240at 46.485 kb on - strand, within CSW01_14240at 46.485 kb on - strand, within CSW01_14240at 46.485 kb on - strand, within CSW01_14240at 46.497 kb on - strand, within CSW01_14240at 46.571 kb on + strand, within CSW01_14240at 46.571 kb on + strand, within CSW01_14240at 46.576 kb on + strand, within CSW01_14240at 46.581 kb on + strand, within CSW01_14240at 46.589 kb on - strand, within CSW01_14240at 46.589 kb on - strand, within CSW01_14240at 46.712 kb on - strandat 46.787 kb on + strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.902 kb on - strand, within CSW01_14245at 46.928 kb on + strand, within CSW01_14245at 46.945 kb on + strand, within CSW01_14245

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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44,817 - CSW01_14230 0.61 +0.1
44,826 + CSW01_14230 0.61 -1.1
44,826 + CSW01_14230 0.61 -1.6
44,914 + CSW01_14230 0.69 +0.0
44,914 + CSW01_14230 0.69 +0.5
44,934 + CSW01_14230 0.70 -0.4
44,972 + CSW01_14230 0.73 +0.9
44,980 - CSW01_14230 0.74 +0.3
45,012 + CSW01_14230 0.77 -1.7
45,022 + CSW01_14230 0.77 -2.7
45,022 + CSW01_14230 0.77 +0.1
45,128 - CSW01_14230 0.86 -2.8
45,298 + +0.7
45,344 + -0.6
45,350 + -0.1
45,506 - +1.2
45,506 - +0.7
45,579 - -0.9
45,595 + -2.1
45,595 + +0.4
45,595 + +0.4
45,595 + -2.5
45,595 + +0.0
45,595 + -0.0
45,603 + -1.4
45,603 - +2.0
45,603 - +1.2
45,639 + +0.9
45,642 - +0.7
45,647 - +1.1
45,649 + -3.4
45,657 - +0.9
45,788 - CSW01_14235 0.33 +0.9
45,811 + CSW01_14235 0.38 +0.1
45,883 - CSW01_14235 0.54 +1.6
45,921 - CSW01_14235 0.63 -0.6
45,933 + CSW01_14235 0.65 +1.3
45,933 + CSW01_14235 0.65 -2.3
46,033 + CSW01_14235 0.87 +0.4
46,213 + CSW01_14240 0.19 -0.3
46,221 - CSW01_14240 0.20 +0.1
46,229 - CSW01_14240 0.22 -0.7
46,389 - CSW01_14240 0.49 +1.2
46,391 + CSW01_14240 0.49 +0.2
46,391 + CSW01_14240 0.49 +1.0
46,436 + CSW01_14240 0.57 -0.4
46,436 + CSW01_14240 0.57 -0.2
46,436 + CSW01_14240 0.57 +0.6
46,444 - CSW01_14240 0.59 +1.2
46,444 - CSW01_14240 0.59 -0.0
46,477 + CSW01_14240 0.64 -2.1
46,477 + CSW01_14240 0.64 +1.8
46,477 + CSW01_14240 0.64 -3.3
46,485 - CSW01_14240 0.66 -0.3
46,485 - CSW01_14240 0.66 -2.7
46,485 - CSW01_14240 0.66 +0.3
46,497 - CSW01_14240 0.68 -3.2
46,571 + CSW01_14240 0.80 -1.5
46,571 + CSW01_14240 0.80 +0.1
46,576 + CSW01_14240 0.81 +0.7
46,581 + CSW01_14240 0.82 -2.4
46,589 - CSW01_14240 0.84 -0.7
46,589 - CSW01_14240 0.84 +0.3
46,712 - -0.1
46,787 + CSW01_14245 0.25 +0.1
46,797 - CSW01_14245 0.27 -1.7
46,797 - CSW01_14245 0.27 +0.5
46,797 - CSW01_14245 0.27 +0.3
46,797 - CSW01_14245 0.27 -2.7
46,797 - CSW01_14245 0.27 -2.0
46,797 - CSW01_14245 0.27 -3.6
46,902 - CSW01_14245 0.52 -2.3
46,928 + CSW01_14245 0.58 -1.3
46,945 + CSW01_14245 0.62 -0.7

Or see this region's nucleotide sequence