Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14210

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14205 and CSW01_14210 are separated by 97 nucleotidesCSW01_14210 and CSW01_14215 are separated by 408 nucleotides CSW01_14205: CSW01_14205 - methyl-accepting chemotaxis protein, at 37,647 to 39,212 _14205 CSW01_14210: CSW01_14210 - hypothetical protein, at 39,310 to 39,870 _14210 CSW01_14215: CSW01_14215 - DUF839 domain-containing protein, at 40,279 to 42,153 _14215 Position (kb) 39 40Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 38.469 kb on + strand, within CSW01_14205at 38.480 kb on + strand, within CSW01_14205at 38.480 kb on + strand, within CSW01_14205at 38.480 kb on + strand, within CSW01_14205at 38.488 kb on - strand, within CSW01_14205at 38.488 kb on - strand, within CSW01_14205at 38.488 kb on - strand, within CSW01_14205at 38.521 kb on + strand, within CSW01_14205at 38.597 kb on + strand, within CSW01_14205at 38.597 kb on + strand, within CSW01_14205at 38.682 kb on + strand, within CSW01_14205at 38.690 kb on - strand, within CSW01_14205at 38.797 kb on + strand, within CSW01_14205at 38.797 kb on + strand, within CSW01_14205at 38.797 kb on + strand, within CSW01_14205at 38.805 kb on - strand, within CSW01_14205at 38.860 kb on - strand, within CSW01_14205at 38.867 kb on + strand, within CSW01_14205at 38.867 kb on + strand, within CSW01_14205at 38.875 kb on - strand, within CSW01_14205at 38.875 kb on - strand, within CSW01_14205at 38.885 kb on + strand, within CSW01_14205at 38.887 kb on - strand, within CSW01_14205at 38.933 kb on - strand, within CSW01_14205at 39.110 kb on + strandat 39.110 kb on + strandat 39.147 kb on - strandat 39.152 kb on + strandat 39.152 kb on + strandat 39.158 kb on - strandat 39.160 kb on - strandat 39.160 kb on - strandat 39.167 kb on - strandat 39.194 kb on + strandat 39.202 kb on - strandat 39.218 kb on + strandat 39.246 kb on - strandat 39.307 kb on + strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.447 kb on + strand, within CSW01_14210at 39.467 kb on + strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.512 kb on + strand, within CSW01_14210at 39.530 kb on - strand, within CSW01_14210at 39.539 kb on + strand, within CSW01_14210at 39.766 kb on + strand, within CSW01_14210at 39.827 kb on + strandat 39.905 kb on + strandat 39.970 kb on - strandat 39.974 kb on - strandat 39.996 kb on + strandat 40.003 kb on + strandat 40.003 kb on + strandat 40.004 kb on - strandat 40.004 kb on - strandat 40.008 kb on + strandat 40.008 kb on + strandat 40.011 kb on - strandat 40.011 kb on - strandat 40.198 kb on + strandat 40.225 kb on + strandat 40.361 kb on + strandat 40.361 kb on + strandat 40.526 kb on - strand, within CSW01_14215at 40.665 kb on + strand, within CSW01_14215at 40.814 kb on - strand, within CSW01_14215at 40.870 kb on - strand, within CSW01_14215at 40.870 kb on - strand, within CSW01_14215

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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38,469 + CSW01_14205 0.52 +1.8
38,480 + CSW01_14205 0.53 +0.2
38,480 + CSW01_14205 0.53 -2.8
38,480 + CSW01_14205 0.53 +0.0
38,488 - CSW01_14205 0.54 +1.3
38,488 - CSW01_14205 0.54 -0.3
38,488 - CSW01_14205 0.54 -1.2
38,521 + CSW01_14205 0.56 -0.5
38,597 + CSW01_14205 0.61 +0.5
38,597 + CSW01_14205 0.61 -0.0
38,682 + CSW01_14205 0.66 +1.7
38,690 - CSW01_14205 0.67 -3.2
38,797 + CSW01_14205 0.73 +2.1
38,797 + CSW01_14205 0.73 +0.2
38,797 + CSW01_14205 0.73 +0.5
38,805 - CSW01_14205 0.74 -3.1
38,860 - CSW01_14205 0.77 +0.2
38,867 + CSW01_14205 0.78 -2.2
38,867 + CSW01_14205 0.78 +0.3
38,875 - CSW01_14205 0.78 -1.1
38,875 - CSW01_14205 0.78 -2.5
38,885 + CSW01_14205 0.79 +2.0
38,887 - CSW01_14205 0.79 +1.0
38,933 - CSW01_14205 0.82 +0.8
39,110 + -3.5
39,110 + +0.3
39,147 - +0.7
39,152 + +1.3
39,152 + -1.5
39,158 - +1.0
39,160 - +0.3
39,160 - +1.6
39,167 - -3.0
39,194 + +0.5
39,202 - -0.2
39,218 + +0.4
39,246 - -2.0
39,307 + -1.6
39,315 - -0.2
39,315 - -2.8
39,315 - +0.2
39,315 - +0.2
39,315 - -0.7
39,447 + CSW01_14210 0.24 -3.1
39,467 + CSW01_14210 0.28 -3.8
39,509 - CSW01_14210 0.35 -0.4
39,509 - CSW01_14210 0.35 +1.3
39,509 - CSW01_14210 0.35 +1.6
39,509 - CSW01_14210 0.35 +0.7
39,509 - CSW01_14210 0.35 -1.8
39,512 + CSW01_14210 0.36 -0.0
39,530 - CSW01_14210 0.39 -0.1
39,539 + CSW01_14210 0.41 +0.9
39,766 + CSW01_14210 0.81 -0.3
39,827 + -1.8
39,905 + +0.7
39,970 - -1.7
39,974 - +0.2
39,996 + -0.6
40,003 + +0.6
40,003 + +0.9
40,004 - +1.4
40,004 - -0.9
40,008 + -1.3
40,008 + -0.5
40,011 - +0.5
40,011 - +1.2
40,198 + -0.2
40,225 + -2.1
40,361 + +0.3
40,361 + +0.1
40,526 - CSW01_14215 0.13 +2.8
40,665 + CSW01_14215 0.21 +0.0
40,814 - CSW01_14215 0.29 +0.3
40,870 - CSW01_14215 0.32 +0.5
40,870 - CSW01_14215 0.32 +1.3

Or see this region's nucleotide sequence