Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14070 and CSW01_14075 are separated by 209 nucleotides CSW01_14075 and CSW01_14080 are separated by 93 nucleotides CSW01_14080 and CSW01_14085 are separated by 87 nucleotides CSW01_14085 and CSW01_14090 are separated by 114 nucleotides
CSW01_14070: CSW01_14070 - transcriptional regulator, at 3,330 to 3,944
_14070
CSW01_14075: CSW01_14075 - hypothetical protein, at 4,154 to 4,351
_14075
CSW01_14080: CSW01_14080 - DUF3283 domain-containing protein, at 4,445 to 4,723
_14080
CSW01_14085: CSW01_14085 - transcriptional regulator, at 4,811 to 5,530
_14085
CSW01_14090: CSW01_14090 - NAD(P)-dependent oxidoreductase, at 5,645 to 6,520
_14090
Position (kb) 4
5 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3.452 kb on + strand, within CSW01_14070 at 3.459 kb on + strand, within CSW01_14070 at 3.460 kb on - strand, within CSW01_14070 at 3.460 kb on - strand, within CSW01_14070 at 3.460 kb on - strand, within CSW01_14070 at 3.460 kb on - strand, within CSW01_14070 at 3.460 kb on - strand, within CSW01_14070 at 3.525 kb on - strand, within CSW01_14070 at 3.532 kb on + strand, within CSW01_14070 at 3.535 kb on - strand, within CSW01_14070 at 3.540 kb on - strand, within CSW01_14070 at 3.585 kb on - strand, within CSW01_14070 at 3.651 kb on + strand, within CSW01_14070 at 3.651 kb on + strand, within CSW01_14070 at 3.675 kb on + strand, within CSW01_14070 at 3.755 kb on + strand, within CSW01_14070 at 3.763 kb on - strand, within CSW01_14070 at 3.763 kb on - strand, within CSW01_14070 at 3.772 kb on - strand, within CSW01_14070 at 3.772 kb on - strand, within CSW01_14070 at 3.782 kb on - strand, within CSW01_14070 at 3.853 kb on + strand, within CSW01_14070 at 3.861 kb on - strand, within CSW01_14070 at 3.973 kb on - strand at 3.973 kb on - strand at 4.011 kb on - strand at 4.117 kb on + strand at 4.125 kb on - strand at 4.166 kb on - strand at 4.265 kb on + strand, within CSW01_14075 at 4.288 kb on + strand, within CSW01_14075 at 4.339 kb on - strand at 4.343 kb on - strand at 4.682 kb on - strand, within CSW01_14080 at 4.755 kb on + strand at 4.867 kb on + strand at 4.875 kb on - strand at 5.111 kb on - strand, within CSW01_14085 at 5.130 kb on + strand, within CSW01_14085 at 5.393 kb on + strand, within CSW01_14085 at 5.429 kb on + strand, within CSW01_14085 at 5.429 kb on + strand, within CSW01_14085 at 5.437 kb on - strand, within CSW01_14085 at 5.437 kb on - strand, within CSW01_14085 at 5.437 kb on - strand, within CSW01_14085 at 5.437 kb on - strand, within CSW01_14085 at 5.503 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 3,452 + CSW01_14070 0.20 +1.5 3,459 + CSW01_14070 0.21 -0.2 3,460 - CSW01_14070 0.21 +1.7 3,460 - CSW01_14070 0.21 +0.0 3,460 - CSW01_14070 0.21 -1.7 3,460 - CSW01_14070 0.21 -1.5 3,460 - CSW01_14070 0.21 -1.7 3,525 - CSW01_14070 0.32 +0.5 3,532 + CSW01_14070 0.33 +0.5 3,535 - CSW01_14070 0.33 +0.4 3,540 - CSW01_14070 0.34 -2.7 3,585 - CSW01_14070 0.41 +2.0 3,651 + CSW01_14070 0.52 +1.3 3,651 + CSW01_14070 0.52 -1.3 3,675 + CSW01_14070 0.56 -1.4 3,755 + CSW01_14070 0.69 -4.0 3,763 - CSW01_14070 0.70 +0.1 3,763 - CSW01_14070 0.70 +0.0 3,772 - CSW01_14070 0.72 +1.4 3,772 - CSW01_14070 0.72 -2.0 3,782 - CSW01_14070 0.73 +0.7 3,853 + CSW01_14070 0.85 +0.8 3,861 - CSW01_14070 0.86 +1.1 3,973 - +1.9 3,973 - +0.3 4,011 - +0.9 4,117 + +0.1 4,125 - -3.0 4,166 - +0.4 4,265 + CSW01_14075 0.56 +2.0 4,288 + CSW01_14075 0.68 -0.5 4,339 - +1.0 4,343 - -1.0 4,682 - CSW01_14080 0.85 -1.4 4,755 + -1.5 4,867 + -1.3 4,875 - -0.1 5,111 - CSW01_14085 0.42 -1.6 5,130 + CSW01_14085 0.44 -1.1 5,393 + CSW01_14085 0.81 +1.9 5,429 + CSW01_14085 0.86 -3.2 5,429 + CSW01_14085 0.86 -1.6 5,437 - CSW01_14085 0.87 -3.3 5,437 - CSW01_14085 0.87 -1.6 5,437 - CSW01_14085 0.87 -0.0 5,437 - CSW01_14085 0.87 -2.1 5,503 + -1.3
Or see this region's nucleotide sequence