Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_12790 and CSW01_12795 overlap by 1 nucleotides CSW01_12795 and CSW01_12800 overlap by 4 nucleotides CSW01_12800 and CSW01_12805 overlap by 65 nucleotides
CSW01_12790: CSW01_12790 - KpsF/GutQ family sugar-phosphate isomerase, at 2,739,974 to 2,740,954
_12790
CSW01_12795: CSW01_12795 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 2,740,954 to 2,741,511
_12795
CSW01_12800: CSW01_12800 - LPS export ABC transporter periplasmic protein LptC, at 2,741,508 to 2,742,071
_12800
CSW01_12805: CSW01_12805 - lipopolysaccharide transport periplasmic protein LptA, at 2,742,007 to 2,742,546
_12805
Position (kb)
2740
2741
2742 Strain fitness (log2 ratio)
-2
-1
0
1 at 2739.959 kb on + strand at 2739.959 kb on + strand at 2739.959 kb on + strand at 2739.967 kb on - strand at 2740.604 kb on + strand, within CSW01_12790 at 2740.933 kb on + strand at 2740.958 kb on + strand at 2740.986 kb on + strand at 2741.009 kb on + strand at 2741.497 kb on + strand at 2741.497 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 2,739,959 + +0.6 2,739,959 + +0.4 2,739,959 + +0.7 2,739,967 - -0.1 2,740,604 + CSW01_12790 0.64 -0.3 2,740,933 + -2.0 2,740,958 + -0.0 2,740,986 + +0.1 2,741,009 + -0.1 2,741,497 + -1.0 2,741,497 + -1.1
Or see this region's nucleotide sequence