Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12265

Experiment: ICP3_phage_411_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_411_MOI_rep2
2,626,507	-				+0.8
2,626,532	+				+0.6
2,626,558	+				-2.6
2,626,578	-				-1.1
2,626,589	+				+0.4
2,626,591	+				+0.6
2,626,591	+				+0.9
2,626,599	-				+0.8
2,626,599	-				-1.0
2,626,617	-				-0.6
2,626,620	-				-1.5
2,626,641	+				+1.2
2,626,641	+				+0.9
2,626,641	+				+0.1
2,626,641	+				-2.7
2,626,649	-				-2.9
2,626,649	-				-2.4
2,626,649	-				-0.7
2,626,649	-				-1.7
2,626,676	-				+0.8
2,626,690	+		CSW01_12260	0.10	-2.2
2,626,690	+		CSW01_12260	0.10	+0.5
2,626,690	+		CSW01_12260	0.10	-2.4
2,626,698	-		CSW01_12260	0.12	+0.7
2,626,698	-		CSW01_12260	0.12	-2.4
2,626,708	+		CSW01_12260	0.13	+0.7
2,626,710	+		CSW01_12260	0.14	-1.8
2,626,710	+		CSW01_12260	0.14	-0.8
2,626,726	-		CSW01_12260	0.17	+0.4
2,626,741	-		CSW01_12260	0.19	+1.1
2,626,773	-		CSW01_12260	0.25	-1.7
2,626,773	-		CSW01_12260	0.25	-1.5
2,626,801	+		CSW01_12260	0.30	-3.3
2,626,822	+		CSW01_12260	0.34	+1.1
2,626,840	-		CSW01_12260	0.38	+0.5
2,626,852	+		CSW01_12260	0.40	-0.6
2,626,966	-		CSW01_12260	0.61	+0.5
2,627,076	+		CSW01_12260	0.81	-1.9
2,627,113	-		CSW01_12260	0.88	+0.4
2,627,113	-		CSW01_12260	0.88	-3.4
2,627,163	+				-2.5
2,627,180	+				+0.7
2,627,180	+				-2.4
2,627,188	-				+0.1
2,627,188	-				-0.4
2,627,207	+				+1.4
2,627,212	+				-0.4
2,627,212	+				+1.0
2,627,212	+				-0.0
2,627,218	+				+0.3
2,627,218	+				+0.0
2,627,219	-				-3.0
2,627,225	-				-4.0
2,627,226	-				-0.7
2,627,226	-				-0.4
2,627,226	-				-1.7
2,627,239	+				-0.6
2,627,244	+				-3.3
2,627,330	+				+0.0
2,627,345	+				-2.1
2,627,345	+				+0.2
2,627,345	+				-2.2
2,627,345	+				+0.7
2,627,353	-				+0.6
2,627,353	-				+2.6
2,627,367	+				+0.5
2,627,367	+				+0.4
2,627,367	+				+0.3
2,627,367	+				+0.7
2,627,375	-				-2.0
2,627,375	-				+1.1
2,627,375	-				-0.9
2,627,439	+				+0.4
2,627,439	+				-0.0
2,627,447	-				+0.1
2,627,447	-				-0.3
2,627,471	-				-2.9
2,627,473	-				-1.2
2,627,619	+		CSW01_12265	0.16	-0.1
2,627,642	-		CSW01_12265	0.19	+0.1
2,627,642	-		CSW01_12265	0.19	+1.5
2,627,649	+		CSW01_12265	0.19	+0.2
2,627,685	+		CSW01_12265	0.23	+1.9
2,627,710	-		CSW01_12265	0.26	-1.9
2,627,743	+		CSW01_12265	0.30	-3.4
2,627,778	-		CSW01_12265	0.34	-0.2
2,627,779	-		CSW01_12265	0.34	-0.5
2,627,786	+		CSW01_12265	0.35	-4.0
2,627,790	+		CSW01_12265	0.35	-3.1
2,627,793	-		CSW01_12265	0.36	-4.0
2,627,794	-		CSW01_12265	0.36	-3.5
2,627,795	+		CSW01_12265	0.36	-3.9
2,627,823	+		CSW01_12265	0.39	-0.4
2,627,892	+		CSW01_12265	0.47	-2.2
2,627,892	+		CSW01_12265	0.47	+0.2
2,627,892	+		CSW01_12265	0.47	-2.7
2,627,900	-		CSW01_12265	0.48	-0.0
2,627,900	-		CSW01_12265	0.48	-1.7
2,627,907	+		CSW01_12265	0.48	-0.4
2,627,932	+		CSW01_12265	0.51	-2.3
2,627,956	+		CSW01_12265	0.54	-1.8
2,627,964	-		CSW01_12265	0.55	-1.1
2,627,966	-		CSW01_12265	0.55	-0.4
2,627,984	+		CSW01_12265	0.57	+1.0
2,628,006	+		CSW01_12265	0.59	+0.0
2,628,036	+		CSW01_12265	0.63	-0.5
2,628,074	+		CSW01_12265	0.67	-1.5
2,628,074	-		CSW01_12265	0.67	-0.5
2,628,074	-		CSW01_12265	0.67	-1.8
2,628,130	-		CSW01_12265	0.73	-0.5
2,628,158	-		CSW01_12265	0.77	+0.7
2,628,180	+		CSW01_12265	0.79	+0.5
2,628,188	-		CSW01_12265	0.80	+0.4
2,628,213	+		CSW01_12265	0.83	-1.8
2,628,213	+		CSW01_12265	0.83	+2.2
2,628,213	+		CSW01_12265	0.83	-0.7
2,628,213	+		CSW01_12265	0.83	-1.4
2,628,213	+		CSW01_12265	0.83	-1.1
2,628,213	+		CSW01_12265	0.83	-0.6
2,628,213	+		CSW01_12265	0.83	-0.3
2,628,213	+		CSW01_12265	0.83	-3.6
2,628,213	+		CSW01_12265	0.83	-0.3
2,628,213	+		CSW01_12265	0.83	-3.8
2,628,213	+		CSW01_12265	0.83	-1.5
2,628,213	+		CSW01_12265	0.83	-0.9
2,628,221	-		CSW01_12265	0.84	-1.1
2,628,221	-		CSW01_12265	0.84	-0.6
2,628,221	-		CSW01_12265	0.84	-1.3
2,628,221	-		CSW01_12265	0.84	-1.1
2,628,266	+		CSW01_12265	0.89	-2.3
2,628,288	-				+0.0
2,628,294	+				+2.2
2,628,327	+				+0.6
2,628,327	+				+0.2
2,628,327	+				-0.4
2,628,327	+				+0.7
2,628,327	+				-2.6
2,628,327	+				-1.0
2,628,327	+				+2.2
2,628,335	+				+0.9
2,628,335	-				-0.5
2,628,335	-				-1.4
2,628,335	-				-1.9
2,628,335	-				+0.8
2,628,528	-				+0.8
2,628,564	+				-0.1
2,628,564	+				-0.3
2,628,572	-				+0.2
2,628,760	+		CSW01_12270	0.32	-0.5
2,628,842	+		CSW01_12270	0.50	-0.5
2,628,861	+		CSW01_12270	0.54	+0.6
2,628,861	+		CSW01_12270	0.54	-3.3
2,628,863	+		CSW01_12270	0.55	-2.3
2,628,863	+		CSW01_12270	0.55	-3.1
2,628,871	-		CSW01_12270	0.56	-1.2
2,628,871	-		CSW01_12270	0.56	+1.4
2,628,871	-		CSW01_12270	0.56	+0.5
2,628,894	-		CSW01_12270	0.61	+0.4
2,628,894	-		CSW01_12270	0.61	-0.6
2,628,905	-		CSW01_12270	0.64	-1.5
2,628,953	+		CSW01_12270	0.74	-4.6
2,629,003	-		CSW01_12270	0.85	-1.3
2,629,011	+		CSW01_12270	0.87	-1.2
2,629,098	+				-0.2
2,629,106	-				+0.6
2,629,106	-				+0.8
2,629,108	+				+1.6
2,629,108	+				+0.9
2,629,108	+				-3.8
2,629,116	-				+0.7
2,629,121	-				-2.2
2,629,149	+				+0.6
2,629,149	+				+0.7
2,629,149	+				+1.1
2,629,149	+				+0.4
2,629,149	+				-1.7
2,629,149	+				+0.6
2,629,157	-				-0.2
2,629,157	-				-2.3
2,629,157	-				-0.7
2,629,157	-				+0.6
2,629,157	-				-2.7
2,629,157	-				-0.2
2,629,208	+				-1.2
2,629,208	+				-0.3
2,629,208	+				+0.1
2,629,208	+				-1.4
2,629,216	-				-0.9
2,629,216	-				-2.4
2,629,216	-				-0.4
2,629,303	-		CSW01_12275	0.14	-1.4
2,629,348	-		CSW01_12275	0.16	+0.3