Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11845

Experiment: ICP3_phage_411_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_411_MOI_rep2
2,517,913	-				-2.8
2,517,966	+				-2.9
2,517,983	+		CSW01_11840	0.10	-1.9
2,518,036	+		CSW01_11840	0.15	-2.4
2,518,078	-		CSW01_11840	0.20	+1.4
2,518,177	-		CSW01_11840	0.29	-0.1
2,518,208	-		CSW01_11840	0.32	+0.5
2,518,219	-		CSW01_11840	0.34	-1.6
2,518,227	+		CSW01_11840	0.34	+1.9
2,518,227	+		CSW01_11840	0.34	-1.8
2,518,227	+		CSW01_11840	0.34	-0.6
2,518,235	-		CSW01_11840	0.35	+2.1
2,518,235	-		CSW01_11840	0.35	+0.9
2,518,253	+		CSW01_11840	0.37	+0.7
2,518,268	-		CSW01_11840	0.38	-0.2
2,518,299	-		CSW01_11840	0.41	-2.4
2,518,360	+		CSW01_11840	0.48	-2.4
2,518,436	-		CSW01_11840	0.55	+0.1
2,518,502	+		CSW01_11840	0.62	-2.9
2,518,510	-		CSW01_11840	0.62	-1.9
2,518,540	+		CSW01_11840	0.65	+1.7
2,518,566	-		CSW01_11840	0.68	+1.5
2,518,566	-		CSW01_11840	0.68	+1.1
2,518,568	+		CSW01_11840	0.68	-3.4
2,518,584	-		CSW01_11840	0.70	-0.4
2,518,647	-		CSW01_11840	0.76	+0.6
2,518,673	+		CSW01_11840	0.79	-0.6
2,518,719	+		CSW01_11840	0.83	+0.4
2,518,727	-		CSW01_11840	0.84	+0.1
2,518,727	-		CSW01_11840	0.84	-3.4
2,518,727	-		CSW01_11840	0.84	-2.5
2,518,730	+		CSW01_11840	0.84	+2.0
2,518,732	+		CSW01_11840	0.84	+1.8
2,518,732	+		CSW01_11840	0.84	-0.3
2,518,738	-		CSW01_11840	0.85	+0.1
2,518,738	-		CSW01_11840	0.85	-2.8
2,518,738	-		CSW01_11840	0.85	-0.2
2,518,738	-		CSW01_11840	0.85	-0.4
2,518,740	-		CSW01_11840	0.85	+0.3
2,518,752	-		CSW01_11840	0.86	-2.6
2,518,752	-		CSW01_11840	0.86	-0.9
2,518,754	+		CSW01_11840	0.87	+0.5
2,518,803	+				+1.8
2,518,803	+				-2.6
2,518,803	+				-0.0
2,518,811	-				+0.9
2,518,811	-				+0.2
2,518,883	+				-1.1
2,518,883	+				-2.4
2,518,883	+				+2.0
2,518,883	+				-1.5
2,518,890	-				+0.0
2,518,891	-				+1.3
2,518,891	-				-3.4
2,518,891	-				+0.2
2,518,891	-				-1.9
2,518,902	+				-0.2
2,518,923	+				+0.1
2,518,930	+				-1.6
2,518,931	-				+0.3
2,518,946	-				-0.3
2,518,988	-				-0.6
2,518,990	+				+0.8
2,519,010	+				+0.7
2,519,012	+				-0.7
2,519,012	+				-1.8
2,519,012	+				-1.1
2,519,012	+				+0.2
2,519,012	+				+0.4
2,519,012	+				+0.5
2,519,012	+				+0.9
2,519,020	-				+0.9
2,519,020	-				+0.6
2,519,020	-				-0.1
2,519,020	-				-0.9
2,519,020	-				-3.7
2,519,044	-				+1.6
2,519,091	-				-2.2
2,519,212	-		CSW01_11845	0.10	+1.6
2,519,294	+		CSW01_11845	0.13	+0.1
2,519,302	-		CSW01_11845	0.13	-0.6
2,519,302	-		CSW01_11845	0.13	+0.7
2,519,369	-		CSW01_11845	0.15	-0.5
2,519,493	+		CSW01_11845	0.19	-3.4
2,519,493	+		CSW01_11845	0.19	-0.2
2,519,522	-		CSW01_11845	0.20	-2.3
2,519,522	-		CSW01_11845	0.20	+0.9
2,519,580	+		CSW01_11845	0.22	-2.3
2,519,587	+		CSW01_11845	0.22	+0.5
2,519,617	+		CSW01_11845	0.23	+3.4
2,519,617	+		CSW01_11845	0.23	+0.1
2,519,625	-		CSW01_11845	0.24	-0.9
2,519,665	+		CSW01_11845	0.25	-2.6
2,519,669	-		CSW01_11845	0.25	-2.1
2,519,748	+		CSW01_11845	0.28	+0.0
2,519,756	-		CSW01_11845	0.28	-0.6
2,519,832	+		CSW01_11845	0.30	+1.0
2,519,832	+		CSW01_11845	0.30	+0.1
2,519,833	-		CSW01_11845	0.30	-3.3
2,519,843	+		CSW01_11845	0.31	+1.4
2,519,851	-		CSW01_11845	0.31	-1.9
2,519,855	+		CSW01_11845	0.31	-0.2
2,519,855	+		CSW01_11845	0.31	-0.9
2,519,863	-		CSW01_11845	0.31	-1.2
2,519,863	-		CSW01_11845	0.31	-2.4
2,519,875	-		CSW01_11845	0.32	+0.3
2,519,884	+		CSW01_11845	0.32	-2.0
2,519,892	-		CSW01_11845	0.32	-1.9
2,519,892	-		CSW01_11845	0.32	-1.1
2,519,892	-		CSW01_11845	0.32	+2.1
2,519,892	-		CSW01_11845	0.32	-0.6
2,519,892	-		CSW01_11845	0.32	-0.2
2,519,894	+		CSW01_11845	0.32	-1.1
2,519,905	+		CSW01_11845	0.33	-1.5
2,519,913	-		CSW01_11845	0.33	-0.6
2,519,936	+		CSW01_11845	0.34	-2.2
2,519,964	+		CSW01_11845	0.35	-1.7
2,519,964	+		CSW01_11845	0.35	+1.0
2,519,972	-		CSW01_11845	0.35	+0.7
2,520,026	+		CSW01_11845	0.37	-0.3
2,520,038	-		CSW01_11845	0.37	+0.1
2,520,075	+		CSW01_11845	0.38	-2.3
2,520,080	+		CSW01_11845	0.38	+0.9
2,520,080	+		CSW01_11845	0.38	-2.7
2,520,083	-		CSW01_11845	0.38	-0.7
2,520,210	-		CSW01_11845	0.43	-1.6
2,520,247	-		CSW01_11845	0.44	+2.0
2,520,267	-		CSW01_11845	0.44	-1.5
2,520,277	-		CSW01_11845	0.45	+1.1
2,520,347	+		CSW01_11845	0.47	-1.9
2,520,378	+		CSW01_11845	0.48	-1.3
2,520,386	-		CSW01_11845	0.48	+0.7
2,520,443	+		CSW01_11845	0.50	-2.1
2,520,503	+		CSW01_11845	0.52	-2.9
2,520,531	-		CSW01_11845	0.53	-1.4
2,520,541	-		CSW01_11845	0.53	+1.4
2,520,552	+		CSW01_11845	0.54	-2.6
2,520,643	+		CSW01_11845	0.57	-1.3
2,520,678	+		CSW01_11845	0.58	-0.7
2,520,696	-		CSW01_11845	0.58	-3.6
2,520,720	-		CSW01_11845	0.59	-0.4
2,520,731	-		CSW01_11845	0.60	+0.1
2,520,764	-		CSW01_11845	0.61	+1.3
2,520,771	+		CSW01_11845	0.61	+0.9
2,520,780	+		CSW01_11845	0.61	-2.4
2,520,780	+		CSW01_11845	0.61	+1.2
2,520,780	+		CSW01_11845	0.61	-0.1
2,520,788	-		CSW01_11845	0.61	+0.2
2,520,788	-		CSW01_11845	0.61	+0.6
2,520,788	-		CSW01_11845	0.61	+1.5
2,520,788	-		CSW01_11845	0.61	-0.2
2,520,788	-		CSW01_11845	0.61	+0.8
2,520,788	-		CSW01_11845	0.61	-1.1
2,520,788	-		CSW01_11845	0.61	+2.5
2,520,788	-		CSW01_11845	0.61	+1.2
2,520,810	+		CSW01_11845	0.62	-2.3
2,520,811	-		CSW01_11845	0.62	-2.6
2,520,857	-		CSW01_11845	0.64	-0.5
2,521,051	+		CSW01_11845	0.70	+0.7
2,521,059	-		CSW01_11845	0.70	+0.7
2,521,073	+		CSW01_11845	0.71	-2.1
2,521,098	+		CSW01_11845	0.71	+0.6
2,521,158	-		CSW01_11845	0.73	-2.0
2,521,160	+		CSW01_11845	0.73	-3.5
2,521,162	+		CSW01_11845	0.74	-1.6
2,521,182	+		CSW01_11845	0.74	-2.6
2,521,242	+		CSW01_11845	0.76	+0.8
2,521,251	-		CSW01_11845	0.76	+1.3
2,521,251	-		CSW01_11845	0.76	-0.9
2,521,296	-		CSW01_11845	0.78	-3.1
2,521,350	-		CSW01_11845	0.80	-1.0
2,521,404	+		CSW01_11845	0.81	-2.2
2,521,409	+		CSW01_11845	0.82	+0.9
2,521,409	+		CSW01_11845	0.82	-4.7
2,521,412	-		CSW01_11845	0.82	-0.5
2,521,412	-		CSW01_11845	0.82	-2.3
2,521,412	-		CSW01_11845	0.82	-0.5
2,521,412	-		CSW01_11845	0.82	+2.6
2,521,412	-		CSW01_11845	0.82	+0.6
2,521,412	-		CSW01_11845	0.82	+2.1
2,521,414	+		CSW01_11845	0.82	-0.4
2,521,414	+		CSW01_11845	0.82	-2.4
2,521,414	+		CSW01_11845	0.82	-1.9
2,521,414	+		CSW01_11845	0.82	-1.0
2,521,419	+		CSW01_11845	0.82	+1.0
2,521,437	+		CSW01_11845	0.83	-2.4
2,521,596	+		CSW01_11845	0.88	-0.7
2,521,596	+		CSW01_11845	0.88	-2.7
2,521,596	+		CSW01_11845	0.88	-1.1
2,521,604	-		CSW01_11845	0.88	-2.7
2,521,722	+				+1.2
2,521,722	+				+0.1
2,521,730	-				+0.4
2,521,730	-				-0.4
2,521,730	-				+0.1
2,521,730	-				+0.2
2,521,730	-				+1.6
2,521,775	+				-2.6
2,521,783	-				-0.6
2,521,803	+				-2.3
2,521,811	-				-1.9
2,521,861	+				-0.3
2,521,861	+				+0.3
2,521,861	+				-1.6
2,521,880	-				+0.2
2,521,882	+				-0.8
2,521,882	-				+0.8
2,521,890	-				+0.0
2,521,899	+				+0.2
2,521,899	+				-1.0
2,521,907	-				+0.8
2,521,907	-				-2.8
2,522,022	-				+1.4
2,522,027	-				-0.5
2,522,278	+				+1.0
2,522,278	+				-2.4
2,522,286	-				+0.1
2,522,303	-				+0.9
2,522,310	+				+0.4
2,522,324	-				+0.3
2,522,353	-				+1.6
2,522,353	-				-0.5
2,522,428	-				-2.0
2,522,463	+				+1.2
2,522,463	+				-0.2
2,522,471	-				+0.8
2,522,577	-		CSW01_11850	0.19	-2.3
2,522,631	+		CSW01_11850	0.24	+0.1
2,522,766	+		CSW01_11850	0.36	+0.7
2,522,766	+		CSW01_11850	0.36	-1.6
2,522,771	+		CSW01_11850	0.36	+0.0
2,522,779	-		CSW01_11850	0.37	-3.8
2,522,779	-		CSW01_11850	0.37	+0.4
2,522,802	+		CSW01_11850	0.39	-1.9
2,522,858	+		CSW01_11850	0.44	-3.3
2,522,871	-		CSW01_11850	0.45	+0.4
2,522,876	-		CSW01_11850	0.45	+0.3