Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_11710 and CSW01_11715 overlap by 4 nucleotides CSW01_11715 and CSW01_11720 are separated by 90 nucleotides CSW01_11720 and CSW01_11725 are separated by 327 nucleotides
CSW01_11710: CSW01_11710 - transcriptional regulator, at 2,486,972 to 2,487,652
_11710
CSW01_11715: CSW01_11715 - RNA polymerase subunit sigma, at 2,487,649 to 2,488,233
_11715
CSW01_11720: CSW01_11720 - ATP-dependent protease, at 2,488,324 to 2,488,905
_11720
CSW01_11725: CSW01_11725 - hypothetical protein, at 2,489,233 to 2,490,033
_11725
Position (kb)
2488
2489 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2487.337 kb on - strand, within CSW01_11710 at 2487.353 kb on + strand, within CSW01_11710 at 2487.434 kb on - strand, within CSW01_11710 at 2487.603 kb on - strand at 2487.613 kb on - strand at 2487.648 kb on + strand at 2487.648 kb on + strand at 2487.656 kb on - strand at 2487.716 kb on + strand, within CSW01_11715 at 2487.716 kb on + strand, within CSW01_11715 at 2487.726 kb on - strand, within CSW01_11715 at 2487.765 kb on + strand, within CSW01_11715 at 2487.793 kb on + strand, within CSW01_11715 at 2487.988 kb on - strand, within CSW01_11715 at 2487.988 kb on - strand, within CSW01_11715 at 2488.031 kb on - strand, within CSW01_11715 at 2488.043 kb on + strand, within CSW01_11715 at 2488.210 kb on + strand at 2488.210 kb on + strand at 2488.231 kb on - strand at 2488.243 kb on + strand at 2488.274 kb on + strand at 2488.344 kb on + strand at 2488.349 kb on - strand at 2488.349 kb on - strand at 2488.354 kb on - strand at 2488.363 kb on + strand at 2488.408 kb on - strand, within CSW01_11720 at 2488.413 kb on - strand, within CSW01_11720 at 2488.425 kb on - strand, within CSW01_11720 at 2488.425 kb on - strand, within CSW01_11720 at 2488.431 kb on + strand, within CSW01_11720 at 2488.431 kb on + strand, within CSW01_11720 at 2488.439 kb on - strand, within CSW01_11720 at 2488.439 kb on - strand, within CSW01_11720 at 2488.439 kb on - strand, within CSW01_11720 at 2488.489 kb on - strand, within CSW01_11720 at 2488.489 kb on - strand, within CSW01_11720 at 2488.585 kb on + strand, within CSW01_11720 at 2488.590 kb on + strand, within CSW01_11720 at 2488.590 kb on + strand, within CSW01_11720 at 2488.593 kb on - strand, within CSW01_11720 at 2488.593 kb on - strand, within CSW01_11720 at 2488.598 kb on - strand, within CSW01_11720 at 2488.603 kb on - strand, within CSW01_11720 at 2488.655 kb on - strand, within CSW01_11720 at 2488.670 kb on - strand, within CSW01_11720 at 2488.726 kb on - strand, within CSW01_11720 at 2488.811 kb on + strand, within CSW01_11720 at 2488.819 kb on - strand, within CSW01_11720 at 2488.819 kb on - strand, within CSW01_11720 at 2488.819 kb on - strand, within CSW01_11720 at 2488.819 kb on - strand, within CSW01_11720 at 2488.819 kb on - strand, within CSW01_11720 at 2488.890 kb on + strand at 2489.000 kb on - strand at 2489.012 kb on - strand at 2489.210 kb on + strand at 2489.212 kb on + strand at 2489.220 kb on - strand at 2489.220 kb on - strand at 2489.230 kb on - strand at 2489.292 kb on - strand at 2489.429 kb on + strand, within CSW01_11725 at 2489.437 kb on - strand, within CSW01_11725 at 2489.442 kb on + strand, within CSW01_11725 at 2489.455 kb on + strand, within CSW01_11725 at 2489.465 kb on - strand, within CSW01_11725 at 2489.601 kb on - strand, within CSW01_11725 at 2489.677 kb on - strand, within CSW01_11725 at 2489.705 kb on + strand, within CSW01_11725 at 2489.782 kb on - strand, within CSW01_11725 at 2489.783 kb on - strand, within CSW01_11725 at 2489.824 kb on + strand, within CSW01_11725 at 2489.889 kb on + strand, within CSW01_11725
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 2,487,337 - CSW01_11710 0.54 +0.4 2,487,353 + CSW01_11710 0.56 +1.0 2,487,434 - CSW01_11710 0.68 +3.8 2,487,603 - +1.1 2,487,613 - +1.0 2,487,648 + +2.3 2,487,648 + +0.6 2,487,656 - -0.7 2,487,716 + CSW01_11715 0.11 +0.6 2,487,716 + CSW01_11715 0.11 +0.4 2,487,726 - CSW01_11715 0.13 -0.7 2,487,765 + CSW01_11715 0.20 +0.7 2,487,793 + CSW01_11715 0.25 +0.5 2,487,988 - CSW01_11715 0.58 +0.8 2,487,988 - CSW01_11715 0.58 +0.6 2,488,031 - CSW01_11715 0.65 -0.6 2,488,043 + CSW01_11715 0.67 -1.1 2,488,210 + +0.7 2,488,210 + +0.7 2,488,231 - +0.2 2,488,243 + -2.0 2,488,274 + +0.4 2,488,344 + -0.9 2,488,349 - -1.2 2,488,349 - -1.6 2,488,354 - +0.9 2,488,363 + +0.4 2,488,408 - CSW01_11720 0.14 +0.4 2,488,413 - CSW01_11720 0.15 +0.4 2,488,425 - CSW01_11720 0.17 +2.4 2,488,425 - CSW01_11720 0.17 +0.6 2,488,431 + CSW01_11720 0.18 +2.0 2,488,431 + CSW01_11720 0.18 -0.3 2,488,439 - CSW01_11720 0.20 +1.1 2,488,439 - CSW01_11720 0.20 +1.1 2,488,439 - CSW01_11720 0.20 -3.0 2,488,489 - CSW01_11720 0.28 -0.4 2,488,489 - CSW01_11720 0.28 +0.3 2,488,585 + CSW01_11720 0.45 -0.5 2,488,590 + CSW01_11720 0.46 -3.3 2,488,590 + CSW01_11720 0.46 -2.7 2,488,593 - CSW01_11720 0.46 +0.5 2,488,593 - CSW01_11720 0.46 +1.1 2,488,598 - CSW01_11720 0.47 -4.3 2,488,603 - CSW01_11720 0.48 +0.3 2,488,655 - CSW01_11720 0.57 -0.0 2,488,670 - CSW01_11720 0.59 +0.0 2,488,726 - CSW01_11720 0.69 +1.1 2,488,811 + CSW01_11720 0.84 -0.8 2,488,819 - CSW01_11720 0.85 +1.2 2,488,819 - CSW01_11720 0.85 +1.1 2,488,819 - CSW01_11720 0.85 -2.5 2,488,819 - CSW01_11720 0.85 +0.7 2,488,819 - CSW01_11720 0.85 -2.4 2,488,890 + +1.3 2,489,000 - -3.3 2,489,012 - -2.3 2,489,210 + -3.0 2,489,212 + +0.4 2,489,220 - +0.8 2,489,220 - +1.1 2,489,230 - +0.9 2,489,292 - -1.2 2,489,429 + CSW01_11725 0.24 +0.9 2,489,437 - CSW01_11725 0.25 +1.2 2,489,442 + CSW01_11725 0.26 -2.2 2,489,455 + CSW01_11725 0.28 -3.2 2,489,465 - CSW01_11725 0.29 +0.3 2,489,601 - CSW01_11725 0.46 +0.2 2,489,677 - CSW01_11725 0.55 +1.5 2,489,705 + CSW01_11725 0.59 -2.4 2,489,782 - CSW01_11725 0.69 -1.0 2,489,783 - CSW01_11725 0.69 +0.3 2,489,824 + CSW01_11725 0.74 -1.3 2,489,889 + CSW01_11725 0.82 -0.2
Or see this region's nucleotide sequence