Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11720

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_11710 and CSW01_11715 overlap by 4 nucleotidesCSW01_11715 and CSW01_11720 are separated by 90 nucleotidesCSW01_11720 and CSW01_11725 are separated by 327 nucleotides CSW01_11710: CSW01_11710 - transcriptional regulator, at 2,486,972 to 2,487,652 _11710 CSW01_11715: CSW01_11715 - RNA polymerase subunit sigma, at 2,487,649 to 2,488,233 _11715 CSW01_11720: CSW01_11720 - ATP-dependent protease, at 2,488,324 to 2,488,905 _11720 CSW01_11725: CSW01_11725 - hypothetical protein, at 2,489,233 to 2,490,033 _11725 Position (kb) 2488 2489Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2487.337 kb on - strand, within CSW01_11710at 2487.353 kb on + strand, within CSW01_11710at 2487.434 kb on - strand, within CSW01_11710at 2487.603 kb on - strandat 2487.613 kb on - strandat 2487.648 kb on + strandat 2487.648 kb on + strandat 2487.656 kb on - strandat 2487.716 kb on + strand, within CSW01_11715at 2487.716 kb on + strand, within CSW01_11715at 2487.726 kb on - strand, within CSW01_11715at 2487.765 kb on + strand, within CSW01_11715at 2487.793 kb on + strand, within CSW01_11715at 2487.988 kb on - strand, within CSW01_11715at 2487.988 kb on - strand, within CSW01_11715at 2488.031 kb on - strand, within CSW01_11715at 2488.043 kb on + strand, within CSW01_11715at 2488.210 kb on + strandat 2488.210 kb on + strandat 2488.231 kb on - strandat 2488.243 kb on + strandat 2488.274 kb on + strandat 2488.344 kb on + strandat 2488.349 kb on - strandat 2488.349 kb on - strandat 2488.354 kb on - strandat 2488.363 kb on + strandat 2488.408 kb on - strand, within CSW01_11720at 2488.413 kb on - strand, within CSW01_11720at 2488.425 kb on - strand, within CSW01_11720at 2488.425 kb on - strand, within CSW01_11720at 2488.431 kb on + strand, within CSW01_11720at 2488.431 kb on + strand, within CSW01_11720at 2488.439 kb on - strand, within CSW01_11720at 2488.439 kb on - strand, within CSW01_11720at 2488.439 kb on - strand, within CSW01_11720at 2488.489 kb on - strand, within CSW01_11720at 2488.489 kb on - strand, within CSW01_11720at 2488.585 kb on + strand, within CSW01_11720at 2488.590 kb on + strand, within CSW01_11720at 2488.590 kb on + strand, within CSW01_11720at 2488.593 kb on - strand, within CSW01_11720at 2488.593 kb on - strand, within CSW01_11720at 2488.598 kb on - strand, within CSW01_11720at 2488.603 kb on - strand, within CSW01_11720at 2488.655 kb on - strand, within CSW01_11720at 2488.670 kb on - strand, within CSW01_11720at 2488.726 kb on - strand, within CSW01_11720at 2488.811 kb on + strand, within CSW01_11720at 2488.819 kb on - strand, within CSW01_11720at 2488.819 kb on - strand, within CSW01_11720at 2488.819 kb on - strand, within CSW01_11720at 2488.819 kb on - strand, within CSW01_11720at 2488.819 kb on - strand, within CSW01_11720at 2488.890 kb on + strandat 2489.000 kb on - strandat 2489.012 kb on - strandat 2489.210 kb on + strandat 2489.212 kb on + strandat 2489.220 kb on - strandat 2489.220 kb on - strandat 2489.230 kb on - strandat 2489.292 kb on - strandat 2489.429 kb on + strand, within CSW01_11725at 2489.437 kb on - strand, within CSW01_11725at 2489.442 kb on + strand, within CSW01_11725at 2489.455 kb on + strand, within CSW01_11725at 2489.465 kb on - strand, within CSW01_11725at 2489.601 kb on - strand, within CSW01_11725at 2489.677 kb on - strand, within CSW01_11725at 2489.705 kb on + strand, within CSW01_11725at 2489.782 kb on - strand, within CSW01_11725at 2489.783 kb on - strand, within CSW01_11725at 2489.824 kb on + strand, within CSW01_11725at 2489.889 kb on + strand, within CSW01_11725

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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2,487,337 - CSW01_11710 0.54 +0.4
2,487,353 + CSW01_11710 0.56 +1.0
2,487,434 - CSW01_11710 0.68 +3.8
2,487,603 - +1.1
2,487,613 - +1.0
2,487,648 + +2.3
2,487,648 + +0.6
2,487,656 - -0.7
2,487,716 + CSW01_11715 0.11 +0.6
2,487,716 + CSW01_11715 0.11 +0.4
2,487,726 - CSW01_11715 0.13 -0.7
2,487,765 + CSW01_11715 0.20 +0.7
2,487,793 + CSW01_11715 0.25 +0.5
2,487,988 - CSW01_11715 0.58 +0.8
2,487,988 - CSW01_11715 0.58 +0.6
2,488,031 - CSW01_11715 0.65 -0.6
2,488,043 + CSW01_11715 0.67 -1.1
2,488,210 + +0.7
2,488,210 + +0.7
2,488,231 - +0.2
2,488,243 + -2.0
2,488,274 + +0.4
2,488,344 + -0.9
2,488,349 - -1.2
2,488,349 - -1.6
2,488,354 - +0.9
2,488,363 + +0.4
2,488,408 - CSW01_11720 0.14 +0.4
2,488,413 - CSW01_11720 0.15 +0.4
2,488,425 - CSW01_11720 0.17 +2.4
2,488,425 - CSW01_11720 0.17 +0.6
2,488,431 + CSW01_11720 0.18 +2.0
2,488,431 + CSW01_11720 0.18 -0.3
2,488,439 - CSW01_11720 0.20 +1.1
2,488,439 - CSW01_11720 0.20 +1.1
2,488,439 - CSW01_11720 0.20 -3.0
2,488,489 - CSW01_11720 0.28 -0.4
2,488,489 - CSW01_11720 0.28 +0.3
2,488,585 + CSW01_11720 0.45 -0.5
2,488,590 + CSW01_11720 0.46 -3.3
2,488,590 + CSW01_11720 0.46 -2.7
2,488,593 - CSW01_11720 0.46 +0.5
2,488,593 - CSW01_11720 0.46 +1.1
2,488,598 - CSW01_11720 0.47 -4.3
2,488,603 - CSW01_11720 0.48 +0.3
2,488,655 - CSW01_11720 0.57 -0.0
2,488,670 - CSW01_11720 0.59 +0.0
2,488,726 - CSW01_11720 0.69 +1.1
2,488,811 + CSW01_11720 0.84 -0.8
2,488,819 - CSW01_11720 0.85 +1.2
2,488,819 - CSW01_11720 0.85 +1.1
2,488,819 - CSW01_11720 0.85 -2.5
2,488,819 - CSW01_11720 0.85 +0.7
2,488,819 - CSW01_11720 0.85 -2.4
2,488,890 + +1.3
2,489,000 - -3.3
2,489,012 - -2.3
2,489,210 + -3.0
2,489,212 + +0.4
2,489,220 - +0.8
2,489,220 - +1.1
2,489,230 - +0.9
2,489,292 - -1.2
2,489,429 + CSW01_11725 0.24 +0.9
2,489,437 - CSW01_11725 0.25 +1.2
2,489,442 + CSW01_11725 0.26 -2.2
2,489,455 + CSW01_11725 0.28 -3.2
2,489,465 - CSW01_11725 0.29 +0.3
2,489,601 - CSW01_11725 0.46 +0.2
2,489,677 - CSW01_11725 0.55 +1.5
2,489,705 + CSW01_11725 0.59 -2.4
2,489,782 - CSW01_11725 0.69 -1.0
2,489,783 - CSW01_11725 0.69 +0.3
2,489,824 + CSW01_11725 0.74 -1.3
2,489,889 + CSW01_11725 0.82 -0.2

Or see this region's nucleotide sequence