Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11300

Experiment: ICP3_phage_411_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_411_MOI_rep2
2,399,490	+				+1.1
2,399,509	+				-2.6
2,399,522	-				+2.3
2,399,533	-				-1.0
2,399,533	-				+0.2
2,399,538	+				-0.1
2,399,546	+				-0.8
2,399,602	-				+0.2
2,399,603	+				+0.4
2,399,603	+				-1.6
2,399,611	-				-1.1
2,399,723	-				-1.0
2,399,739	-				+1.3
2,399,763	+				+2.4
2,399,771	-				-0.4
2,399,782	+				-1.0
2,399,830	+		CSW01_11300	0.10	+1.2
2,399,838	-		CSW01_11300	0.11	+2.0
2,399,838	-		CSW01_11300	0.11	+0.2
2,399,850	-		CSW01_11300	0.11	-0.8
2,399,866	-		CSW01_11300	0.12	+1.1
2,399,878	+		CSW01_11300	0.12	+0.7
2,399,887	+		CSW01_11300	0.12	+0.5
2,399,887	+		CSW01_11300	0.12	+1.3
2,399,895	-		CSW01_11300	0.13	+0.2
2,399,988	+		CSW01_11300	0.16	-1.4
2,400,020	+		CSW01_11300	0.17	-0.1
2,400,021	-		CSW01_11300	0.17	-1.0
2,400,058	-		CSW01_11300	0.19	+0.3
2,400,066	+		CSW01_11300	0.19	+1.0
2,400,138	-		CSW01_11300	0.21	-1.9
2,400,149	-		CSW01_11300	0.22	+0.6
2,400,153	+		CSW01_11300	0.22	-2.3
2,400,153	+		CSW01_11300	0.22	-0.4
2,400,161	-		CSW01_11300	0.22	-0.3
2,400,161	-		CSW01_11300	0.22	-0.5
2,400,163	-		CSW01_11300	0.22	+0.6
2,400,165	+		CSW01_11300	0.22	-2.2
2,400,173	+		CSW01_11300	0.23	+0.1
2,400,195	-		CSW01_11300	0.24	-1.0
2,400,220	+		CSW01_11300	0.24	-3.2
2,400,220	+		CSW01_11300	0.24	-0.0
2,400,220	+		CSW01_11300	0.24	+0.5
2,400,220	+		CSW01_11300	0.24	-2.6
2,400,220	+		CSW01_11300	0.24	+0.1
2,400,220	+		CSW01_11300	0.24	-0.2
2,400,220	+		CSW01_11300	0.24	-2.6
2,400,220	+		CSW01_11300	0.24	+0.5
2,400,220	+		CSW01_11300	0.24	-0.6
2,400,220	+		CSW01_11300	0.24	+0.3
2,400,220	+		CSW01_11300	0.24	-0.1
2,400,220	+		CSW01_11300	0.24	-0.5
2,400,228	-		CSW01_11300	0.25	-2.0
2,400,228	-		CSW01_11300	0.25	+0.7
2,400,228	-		CSW01_11300	0.25	-0.1
2,400,228	-		CSW01_11300	0.25	-1.6
2,400,228	-		CSW01_11300	0.25	-1.2
2,400,264	-		CSW01_11300	0.26	-0.3
2,400,267	+		CSW01_11300	0.26	+0.2
2,400,267	+		CSW01_11300	0.26	-1.8
2,400,275	-		CSW01_11300	0.26	-1.5
2,400,275	-		CSW01_11300	0.26	-0.2
2,400,275	-		CSW01_11300	0.26	+0.1
2,400,329	-		CSW01_11300	0.28	+0.2
2,400,329	-		CSW01_11300	0.28	-3.4
2,400,353	-		CSW01_11300	0.29	-2.3
2,400,355	+		CSW01_11300	0.29	-2.4
2,400,355	+		CSW01_11300	0.29	-0.8
2,400,363	-		CSW01_11300	0.30	-2.4
2,400,458	+		CSW01_11300	0.33	+0.1
2,400,458	+		CSW01_11300	0.33	+0.3
2,400,458	+		CSW01_11300	0.33	+1.7
2,400,458	+		CSW01_11300	0.33	-0.2
2,400,458	+		CSW01_11300	0.33	-0.6
2,400,458	+		CSW01_11300	0.33	-1.0
2,400,458	+		CSW01_11300	0.33	+0.6
2,400,458	-		CSW01_11300	0.33	-0.7
2,400,460	+		CSW01_11300	0.33	-0.2
2,400,503	+		CSW01_11300	0.35	-0.5
2,400,511	-		CSW01_11300	0.35	+1.3
2,400,555	-		CSW01_11300	0.37	+1.0
2,400,573	-		CSW01_11300	0.37	-0.8
2,400,594	-		CSW01_11300	0.38	-0.2
2,400,631	-		CSW01_11300	0.39	+1.6
2,400,713	+		CSW01_11300	0.42	+1.6
2,400,721	-		CSW01_11300	0.43	+1.1
2,400,721	-		CSW01_11300	0.43	-1.5
2,400,783	-		CSW01_11300	0.45	-1.3
2,400,810	-		CSW01_11300	0.46	+0.8
2,400,810	-		CSW01_11300	0.46	+1.6
2,400,810	-		CSW01_11300	0.46	-1.4
2,400,812	-		CSW01_11300	0.46	-1.7
2,400,812	-		CSW01_11300	0.46	+0.0
2,400,812	-		CSW01_11300	0.46	-0.1
2,400,812	-		CSW01_11300	0.46	-0.4
2,400,838	-		CSW01_11300	0.47	+0.1
2,400,838	-		CSW01_11300	0.47	-0.1
2,400,848	+		CSW01_11300	0.47	+1.0
2,400,853	+		CSW01_11300	0.47	+1.5
2,400,853	+		CSW01_11300	0.47	-2.1
2,400,853	+		CSW01_11300	0.47	+1.9
2,400,853	+		CSW01_11300	0.47	-2.0
2,400,853	+		CSW01_11300	0.47	-0.9
2,400,853	+		CSW01_11300	0.47	-0.2
2,400,853	+		CSW01_11300	0.47	-1.8
2,400,856	-		CSW01_11300	0.48	+1.1
2,400,856	-		CSW01_11300	0.48	-1.6
2,400,858	+		CSW01_11300	0.48	+1.2
2,400,861	-		CSW01_11300	0.48	+0.8
2,400,861	-		CSW01_11300	0.48	-1.2
2,400,861	-		CSW01_11300	0.48	+1.3
2,400,861	-		CSW01_11300	0.48	-1.4
2,400,861	-		CSW01_11300	0.48	+2.4
2,400,866	-		CSW01_11300	0.48	+0.0
2,400,866	-		CSW01_11300	0.48	-0.1
2,400,866	-		CSW01_11300	0.48	+0.6
2,400,866	-		CSW01_11300	0.48	-2.5
2,400,866	-		CSW01_11300	0.48	+2.3
2,400,882	+		CSW01_11300	0.49	+0.8
2,400,891	-		CSW01_11300	0.49	+0.8
2,400,901	+		CSW01_11300	0.49	+1.3
2,400,966	+		CSW01_11300	0.52	-1.0
2,401,045	-		CSW01_11300	0.54	-0.5
2,401,045	-		CSW01_11300	0.54	-0.4
2,401,078	+		CSW01_11300	0.56	-2.6
2,401,144	+		CSW01_11300	0.58	+0.4
2,401,152	-		CSW01_11300	0.58	+0.6
2,401,193	+		CSW01_11300	0.60	+0.6
2,401,201	-		CSW01_11300	0.60	+0.1
2,401,203	+		CSW01_11300	0.60	+1.5
2,401,218	-		CSW01_11300	0.61	+0.7
2,401,301	+		CSW01_11300	0.64	+0.4
2,401,301	+		CSW01_11300	0.64	+0.2
2,401,309	-		CSW01_11300	0.64	+2.1
2,401,365	-		CSW01_11300	0.66	-2.2
2,401,401	-		CSW01_11300	0.67	-0.4
2,401,401	-		CSW01_11300	0.67	+2.0
2,401,411	+		CSW01_11300	0.68	+0.4
2,401,434	+		CSW01_11300	0.69	+1.5
2,401,434	+		CSW01_11300	0.69	-1.1
2,401,434	+		CSW01_11300	0.69	-1.5
2,401,434	+		CSW01_11300	0.69	+1.5
2,401,442	-		CSW01_11300	0.69	+0.8
2,401,442	-		CSW01_11300	0.69	-2.7
2,401,503	+		CSW01_11300	0.71	+0.2
2,401,511	-		CSW01_11300	0.71	-1.0
2,401,511	-		CSW01_11300	0.71	-1.5
2,401,612	-		CSW01_11300	0.75	-2.0
2,401,661	+		CSW01_11300	0.77	+0.2
2,401,668	-		CSW01_11300	0.77	+0.4
2,401,681	+		CSW01_11300	0.78	+1.9
2,401,689	-		CSW01_11300	0.78	-1.2
2,401,704	+		CSW01_11300	0.78	-0.4
2,401,734	-		CSW01_11300	0.80	+1.4
2,401,745	-		CSW01_11300	0.80	+1.4
2,401,750	-		CSW01_11300	0.80	+2.2
2,401,760	-		CSW01_11300	0.80	+0.4
2,401,782	+		CSW01_11300	0.81	-2.6
2,401,790	-		CSW01_11300	0.82	+0.2
2,401,850	-		CSW01_11300	0.84	-0.2
2,401,880	+		CSW01_11300	0.85	-0.8
2,401,939	+		CSW01_11300	0.87	+1.2
2,401,982	+		CSW01_11300	0.89	-1.4
2,401,990	-		CSW01_11300	0.89	+0.5
2,401,990	-		CSW01_11300	0.89	+0.9
2,402,008	-		CSW01_11300	0.89	-3.1
2,402,038	-				+2.4
2,402,042	+				+2.9
2,402,042	+				+3.3
2,402,050	-				-2.0
2,402,050	-				+1.0
2,402,082	-				-3.6
2,402,082	-				-1.6
2,402,082	-				+0.8
2,402,089	+				+0.5
2,402,161	+				-0.1
2,402,161	+				-2.8
2,402,164	-				-1.9
2,402,169	-				+0.8
2,402,190	+				+1.3
2,402,190	+				+0.1
2,402,190	+				-1.6
2,402,190	+				+1.2
2,402,195	+				+1.5
2,402,332	-				-0.2
2,402,415	+		CSW01_11305	0.27	-2.1
2,402,438	+		CSW01_11305	0.32	+1.2
2,402,477	+		CSW01_11305	0.41	+1.3
2,402,477	+		CSW01_11305	0.41	-0.0
2,402,477	+		CSW01_11305	0.41	-1.0
2,402,477	+		CSW01_11305	0.41	-0.7
2,402,485	-		CSW01_11305	0.42	+0.9
2,402,485	-		CSW01_11305	0.42	+1.8
2,402,540	-		CSW01_11305	0.55	-1.1
2,402,583	-		CSW01_11305	0.64	+1.4
2,402,642	-		CSW01_11305	0.77	+0.1
2,402,686	+		CSW01_11305	0.87	-3.5
2,402,686	-		CSW01_11305	0.87	-0.6
2,402,693	+		CSW01_11305	0.88	-3.5
2,402,694	-		CSW01_11305	0.89	+3.1
2,402,701	-				+0.3
2,402,701	-				+0.4
2,402,752	-				+1.6
2,402,752	-				+2.0
2,402,775	+				+1.6
2,402,921	+				-3.6
2,402,990	+				+1.0
2,402,990	+				-0.3
2,403,008	+				-0.5
2,403,016	-				+0.9
2,403,016	-				+1.2
2,403,032	-				+0.6
2,403,132	+				+1.1
2,403,140	-				+1.2
2,403,171	+		CSW01_11310	0.11	-3.3
2,403,235	+		CSW01_11310	0.13	+1.7
2,403,240	+		CSW01_11310	0.13	+0.2
2,403,240	+		CSW01_11310	0.13	+0.0
2,403,290	+		CSW01_11310	0.15	-1.8