Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09580

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_09565 and CSW01_09570 are separated by 11 nucleotidesCSW01_09570 and CSW01_09575 are separated by 138 nucleotidesCSW01_09575 and CSW01_09580 are separated by 287 nucleotidesCSW01_09580 and CSW01_09585 are separated by 108 nucleotidesCSW01_09585 and CSW01_09590 are separated by 182 nucleotides CSW01_09565: CSW01_09565 - lipopolysaccharide assembly protein LapB, at 2,060,410 to 2,061,579 _09565 CSW01_09570: CSW01_09570 - DUF1049 domain-containing protein, at 2,061,591 to 2,061,872 _09570 CSW01_09575: CSW01_09575 - integration host factor subunit beta, at 2,062,011 to 2,062,289 _09575 CSW01_09580: CSW01_09580 - 30S ribosomal protein S1, at 2,062,577 to 2,064,247 _09580 CSW01_09585: CSW01_09585 - cytidylate kinase, at 2,064,356 to 2,065,033 _09585 CSW01_09590: CSW01_09590 - competence protein ComEA, at 2,065,216 to 2,065,527 _09590 Position (kb) 2062 2063 2064 2065Strain fitness (log2 ratio) -1 0 1at 2064.362 kb on - strandat 2065.112 kb on - strandat 2065.125 kb on + strandat 2065.125 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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2,064,362 - -1.0
2,065,112 - -0.6
2,065,125 + +0.2
2,065,125 + +1.2

Or see this region's nucleotide sequence