Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_09065 and CSW01_09070 are separated by 34 nucleotides CSW01_09070 and CSW01_09075 are separated by 291 nucleotides CSW01_09075 and CSW01_09080 are separated by 114 nucleotides CSW01_09080 and CSW01_09085 are separated by 599 nucleotides
CSW01_09065: CSW01_09065 - GTPase, at 1,948,480 to 1,949,466
_09065
CSW01_09070: CSW01_09070 - transposase, at 1,949,501 to 1,950,141
_09070
CSW01_09075: CSW01_09075 - hypothetical protein, at 1,950,433 to 1,951,278
_09075
CSW01_09080: CSW01_09080 - transcriptional regulator, at 1,951,393 to 1,951,623
_09080
CSW01_09085: CSW01_09085 - DUF2986 domain-containing protein, at 1,952,223 to 1,952,426
_09085
Position (kb) 1950
1951
1952 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1949.599 kb on - strand, within CSW01_09070 at 1949.646 kb on + strand, within CSW01_09070 at 1949.656 kb on + strand, within CSW01_09070 at 1949.661 kb on + strand, within CSW01_09070 at 1949.661 kb on + strand, within CSW01_09070 at 1949.671 kb on - strand, within CSW01_09070 at 1949.688 kb on - strand, within CSW01_09070 at 1949.688 kb on - strand, within CSW01_09070 at 1949.702 kb on - strand, within CSW01_09070 at 1949.709 kb on + strand, within CSW01_09070 at 1949.717 kb on - strand, within CSW01_09070 at 1949.733 kb on + strand, within CSW01_09070 at 1949.809 kb on + strand, within CSW01_09070 at 1949.817 kb on - strand, within CSW01_09070 at 1949.822 kb on - strand, within CSW01_09070 at 1949.822 kb on - strand, within CSW01_09070 at 1949.827 kb on + strand, within CSW01_09070 at 1949.835 kb on - strand, within CSW01_09070 at 1949.862 kb on + strand, within CSW01_09070 at 1949.870 kb on - strand, within CSW01_09070 at 1949.876 kb on - strand, within CSW01_09070 at 1949.943 kb on - strand, within CSW01_09070 at 1949.945 kb on + strand, within CSW01_09070 at 1949.953 kb on - strand, within CSW01_09070 at 1949.967 kb on + strand, within CSW01_09070 at 1949.992 kb on + strand, within CSW01_09070 at 1949.998 kb on - strand, within CSW01_09070 at 1950.148 kb on + strand at 1950.154 kb on + strand at 1950.156 kb on - strand at 1950.161 kb on - strand at 1950.161 kb on - strand at 1950.161 kb on - strand at 1950.189 kb on + strand at 1950.210 kb on - strand at 1950.237 kb on + strand at 1950.245 kb on - strand at 1950.249 kb on + strand at 1950.269 kb on + strand at 1950.274 kb on + strand at 1950.274 kb on + strand at 1950.274 kb on + strand at 1950.274 kb on - strand at 1950.282 kb on - strand at 1950.282 kb on - strand at 1950.282 kb on - strand at 1950.282 kb on - strand at 1950.282 kb on - strand at 1950.282 kb on - strand at 1950.300 kb on - strand at 1950.302 kb on - strand at 1950.304 kb on - strand at 1950.306 kb on + strand at 1950.314 kb on - strand at 1950.317 kb on + strand at 1950.323 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.329 kb on + strand at 1950.331 kb on - strand at 1950.335 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.337 kb on - strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on + strand at 1950.339 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.347 kb on - strand at 1950.375 kb on + strand at 1950.383 kb on - strand at 1950.383 kb on - strand at 1950.408 kb on + strand at 1950.484 kb on + strand at 1950.484 kb on + strand at 1950.535 kb on + strand, within CSW01_09075 at 1950.535 kb on + strand, within CSW01_09075 at 1950.535 kb on + strand, within CSW01_09075 at 1950.535 kb on + strand, within CSW01_09075 at 1950.535 kb on + strand, within CSW01_09075 at 1950.535 kb on + strand, within CSW01_09075 at 1950.543 kb on - strand, within CSW01_09075 at 1950.543 kb on - strand, within CSW01_09075 at 1950.545 kb on + strand, within CSW01_09075 at 1950.545 kb on + strand, within CSW01_09075 at 1950.556 kb on - strand, within CSW01_09075 at 1950.558 kb on + strand, within CSW01_09075 at 1950.605 kb on + strand, within CSW01_09075 at 1950.612 kb on + strand, within CSW01_09075 at 1950.622 kb on + strand, within CSW01_09075 at 1950.630 kb on - strand, within CSW01_09075 at 1950.630 kb on - strand, within CSW01_09075 at 1950.630 kb on - strand, within CSW01_09075 at 1950.733 kb on - strand, within CSW01_09075 at 1950.733 kb on - strand, within CSW01_09075 at 1950.733 kb on - strand, within CSW01_09075 at 1950.748 kb on - strand, within CSW01_09075 at 1950.829 kb on + strand, within CSW01_09075 at 1950.860 kb on + strand, within CSW01_09075 at 1950.860 kb on + strand, within CSW01_09075 at 1950.871 kb on + strand, within CSW01_09075 at 1950.879 kb on - strand, within CSW01_09075 at 1950.880 kb on - strand, within CSW01_09075 at 1950.890 kb on - strand, within CSW01_09075 at 1950.984 kb on - strand, within CSW01_09075 at 1950.995 kb on - strand, within CSW01_09075 at 1951.145 kb on + strand, within CSW01_09075 at 1951.176 kb on - strand, within CSW01_09075 at 1951.290 kb on + strand at 1951.312 kb on - strand at 1951.417 kb on + strand, within CSW01_09080 at 1951.417 kb on + strand, within CSW01_09080 at 1951.417 kb on + strand, within CSW01_09080 at 1951.425 kb on - strand, within CSW01_09080 at 1951.425 kb on - strand, within CSW01_09080 at 1951.425 kb on - strand, within CSW01_09080 at 1951.427 kb on + strand, within CSW01_09080 at 1951.427 kb on + strand, within CSW01_09080 at 1951.427 kb on + strand, within CSW01_09080 at 1951.427 kb on + strand, within CSW01_09080 at 1951.430 kb on - strand, within CSW01_09080 at 1951.430 kb on - strand, within CSW01_09080 at 1951.434 kb on + strand, within CSW01_09080 at 1951.435 kb on - strand, within CSW01_09080 at 1951.435 kb on - strand, within CSW01_09080 at 1951.435 kb on - strand, within CSW01_09080 at 1951.440 kb on - strand, within CSW01_09080 at 1951.440 kb on - strand, within CSW01_09080 at 1951.459 kb on - strand, within CSW01_09080 at 1951.462 kb on + strand, within CSW01_09080 at 1951.474 kb on - strand, within CSW01_09080 at 1951.476 kb on + strand, within CSW01_09080 at 1951.531 kb on + strand, within CSW01_09080 at 1951.546 kb on + strand, within CSW01_09080 at 1951.546 kb on + strand, within CSW01_09080 at 1951.554 kb on - strand, within CSW01_09080 at 1951.577 kb on + strand, within CSW01_09080 at 1951.601 kb on + strand at 1951.601 kb on + strand at 1951.601 kb on + strand at 1951.702 kb on - strand at 1951.707 kb on + strand at 1951.745 kb on + strand at 1951.777 kb on - strand at 1951.809 kb on - strand at 1951.809 kb on - strand at 1951.809 kb on - strand at 1951.809 kb on - strand at 1951.993 kb on - strand at 1952.110 kb on - strand at 1952.214 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 1,949,599 - CSW01_09070 0.15 -0.7 1,949,646 + CSW01_09070 0.23 +0.2 1,949,656 + CSW01_09070 0.24 -1.1 1,949,661 + CSW01_09070 0.25 +1.0 1,949,661 + CSW01_09070 0.25 +0.0 1,949,671 - CSW01_09070 0.27 +0.2 1,949,688 - CSW01_09070 0.29 +0.2 1,949,688 - CSW01_09070 0.29 +0.0 1,949,702 - CSW01_09070 0.31 -0.4 1,949,709 + CSW01_09070 0.32 +0.9 1,949,717 - CSW01_09070 0.34 +0.6 1,949,733 + CSW01_09070 0.36 -1.4 1,949,809 + CSW01_09070 0.48 -2.7 1,949,817 - CSW01_09070 0.49 -0.5 1,949,822 - CSW01_09070 0.50 +0.0 1,949,822 - CSW01_09070 0.50 +0.3 1,949,827 + CSW01_09070 0.51 -1.5 1,949,835 - CSW01_09070 0.52 -1.3 1,949,862 + CSW01_09070 0.56 +0.4 1,949,870 - CSW01_09070 0.58 -1.8 1,949,876 - CSW01_09070 0.59 -2.5 1,949,943 - CSW01_09070 0.69 -1.1 1,949,945 + CSW01_09070 0.69 -1.5 1,949,953 - CSW01_09070 0.71 +0.3 1,949,967 + CSW01_09070 0.73 -2.2 1,949,992 + CSW01_09070 0.77 -1.7 1,949,998 - CSW01_09070 0.78 -0.4 1,950,148 + -1.5 1,950,154 + -2.7 1,950,156 - -3.6 1,950,161 - +1.1 1,950,161 - +0.2 1,950,161 - -0.9 1,950,189 + -1.5 1,950,210 - -0.6 1,950,237 + -3.0 1,950,245 - +0.4 1,950,249 + +1.7 1,950,269 + +0.7 1,950,274 + -3.1 1,950,274 + -2.2 1,950,274 + -1.5 1,950,274 - +0.3 1,950,282 - +0.7 1,950,282 - +0.5 1,950,282 - +1.1 1,950,282 - +0.3 1,950,282 - -3.2 1,950,282 - -0.2 1,950,300 - -3.6 1,950,302 - -2.3 1,950,304 - +1.4 1,950,306 + -1.2 1,950,314 - +1.0 1,950,317 + +0.4 1,950,323 + -2.7 1,950,329 + +0.7 1,950,329 + -0.9 1,950,329 + -3.4 1,950,329 + -2.5 1,950,329 + +0.0 1,950,329 + -1.4 1,950,329 + -0.8 1,950,329 + +0.0 1,950,329 + -0.6 1,950,329 + -0.6 1,950,329 + +0.0 1,950,329 + -0.6 1,950,329 + +0.1 1,950,329 + +0.7 1,950,329 + -1.6 1,950,329 + -3.0 1,950,329 + -3.2 1,950,329 + +0.9 1,950,329 + +0.1 1,950,329 + -2.3 1,950,329 + -0.2 1,950,329 + +0.8 1,950,329 + -0.3 1,950,329 + +1.4 1,950,329 + -0.7 1,950,329 + -1.7 1,950,329 + +0.2 1,950,329 + -1.3 1,950,331 - -0.7 1,950,335 - +0.2 1,950,337 - -0.8 1,950,337 - -0.0 1,950,337 - -3.4 1,950,337 - -0.0 1,950,337 - +0.1 1,950,337 - -1.3 1,950,337 - +0.7 1,950,337 - -0.9 1,950,337 - +1.1 1,950,337 - +1.7 1,950,337 - -1.6 1,950,337 - -0.5 1,950,337 - -0.0 1,950,337 - -0.9 1,950,337 - -0.6 1,950,337 - -1.9 1,950,337 - -0.8 1,950,337 - -0.6 1,950,337 - -1.1 1,950,337 - +1.3 1,950,337 - -0.0 1,950,337 - -0.1 1,950,337 - +1.3 1,950,337 - -0.7 1,950,337 - +1.0 1,950,339 + +0.3 1,950,339 + +0.3 1,950,339 + -2.7 1,950,339 + -1.2 1,950,339 + +0.1 1,950,339 + -0.5 1,950,339 + -0.2 1,950,339 + +1.2 1,950,339 + +0.6 1,950,339 + +0.0 1,950,339 + +0.0 1,950,339 + +0.5 1,950,339 + -1.4 1,950,339 + -1.3 1,950,339 + -3.1 1,950,339 + -0.2 1,950,339 + +1.0 1,950,339 + -1.8 1,950,339 + -3.1 1,950,339 + +1.0 1,950,339 + -3.5 1,950,339 + -1.1 1,950,339 + -0.5 1,950,339 + -2.7 1,950,339 + -0.6 1,950,339 + -2.0 1,950,339 + -0.1 1,950,339 + -0.3 1,950,339 + +0.0 1,950,339 + -2.7 1,950,339 + -1.5 1,950,339 + +1.1 1,950,339 + -0.2 1,950,339 - -0.5 1,950,347 - -0.8 1,950,347 - -1.1 1,950,347 - -1.9 1,950,347 - -0.5 1,950,347 - -1.1 1,950,347 - -0.5 1,950,347 - -2.0 1,950,347 - -0.3 1,950,347 - +0.6 1,950,347 - +0.7 1,950,347 - -2.1 1,950,347 - +0.8 1,950,347 - +0.8 1,950,347 - -1.6 1,950,347 - +0.0 1,950,347 - +0.1 1,950,347 - -1.8 1,950,347 - -0.4 1,950,347 - -0.6 1,950,347 - +0.7 1,950,347 - -2.1 1,950,347 - -0.1 1,950,347 - +0.1 1,950,347 - +0.5 1,950,347 - -1.0 1,950,375 + -1.0 1,950,383 - -2.7 1,950,383 - -0.0 1,950,408 + +0.1 1,950,484 + -0.4 1,950,484 + -3.8 1,950,535 + CSW01_09075 0.12 -1.3 1,950,535 + CSW01_09075 0.12 -2.1 1,950,535 + CSW01_09075 0.12 -1.6 1,950,535 + CSW01_09075 0.12 -0.7 1,950,535 + CSW01_09075 0.12 -2.3 1,950,535 + CSW01_09075 0.12 -2.9 1,950,543 - CSW01_09075 0.13 -3.1 1,950,543 - CSW01_09075 0.13 -3.3 1,950,545 + CSW01_09075 0.13 -1.7 1,950,545 + CSW01_09075 0.13 +1.4 1,950,556 - CSW01_09075 0.15 -1.0 1,950,558 + CSW01_09075 0.15 -1.0 1,950,605 + CSW01_09075 0.20 -0.7 1,950,612 + CSW01_09075 0.21 -3.0 1,950,622 + CSW01_09075 0.22 -3.3 1,950,630 - CSW01_09075 0.23 -1.6 1,950,630 - CSW01_09075 0.23 +0.5 1,950,630 - CSW01_09075 0.23 -1.0 1,950,733 - CSW01_09075 0.35 -0.1 1,950,733 - CSW01_09075 0.35 -1.7 1,950,733 - CSW01_09075 0.35 -2.1 1,950,748 - CSW01_09075 0.37 -2.5 1,950,829 + CSW01_09075 0.47 -0.2 1,950,860 + CSW01_09075 0.50 -0.5 1,950,860 + CSW01_09075 0.50 -1.5 1,950,871 + CSW01_09075 0.52 -0.3 1,950,879 - CSW01_09075 0.53 -0.1 1,950,880 - CSW01_09075 0.53 -1.8 1,950,890 - CSW01_09075 0.54 +0.7 1,950,984 - CSW01_09075 0.65 +1.0 1,950,995 - CSW01_09075 0.66 -3.0 1,951,145 + CSW01_09075 0.84 -1.0 1,951,176 - CSW01_09075 0.88 +0.5 1,951,290 + -0.3 1,951,312 - +0.7 1,951,417 + CSW01_09080 0.10 +0.9 1,951,417 + CSW01_09080 0.10 -0.1 1,951,417 + CSW01_09080 0.10 -0.0 1,951,425 - CSW01_09080 0.14 -0.0 1,951,425 - CSW01_09080 0.14 +0.4 1,951,425 - CSW01_09080 0.14 -0.7 1,951,427 + CSW01_09080 0.15 -3.0 1,951,427 + CSW01_09080 0.15 -0.7 1,951,427 + CSW01_09080 0.15 +0.4 1,951,427 + CSW01_09080 0.15 +2.2 1,951,430 - CSW01_09080 0.16 +1.0 1,951,430 - CSW01_09080 0.16 +1.0 1,951,434 + CSW01_09080 0.18 -3.7 1,951,435 - CSW01_09080 0.18 -0.0 1,951,435 - CSW01_09080 0.18 +0.3 1,951,435 - CSW01_09080 0.18 -0.8 1,951,440 - CSW01_09080 0.20 -0.4 1,951,440 - CSW01_09080 0.20 +0.2 1,951,459 - CSW01_09080 0.29 +0.2 1,951,462 + CSW01_09080 0.30 +0.6 1,951,474 - CSW01_09080 0.35 -1.4 1,951,476 + CSW01_09080 0.36 +0.3 1,951,531 + CSW01_09080 0.60 -0.4 1,951,546 + CSW01_09080 0.66 -1.4 1,951,546 + CSW01_09080 0.66 -0.1 1,951,554 - CSW01_09080 0.70 -1.0 1,951,577 + CSW01_09080 0.80 -3.1 1,951,601 + -1.8 1,951,601 + +1.0 1,951,601 + -0.1 1,951,702 - +0.2 1,951,707 + -0.7 1,951,745 + +0.7 1,951,777 - -0.6 1,951,809 - +1.0 1,951,809 - -0.8 1,951,809 - -1.0 1,951,809 - -0.3 1,951,993 - -0.9 1,952,110 - -1.3 1,952,214 - +0.8
Or see this region's nucleotide sequence