Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_08415 and CSW01_08420 overlap by 29 nucleotides CSW01_08420 and CSW01_08425 are separated by 171 nucleotides CSW01_08425 and CSW01_08430 overlap by 35 nucleotides CSW01_08430 and CSW01_08435 are separated by 13 nucleotides
CSW01_08415: CSW01_08415 - efflux RND transporter periplasmic adaptor subunit, at 1,807,656 to 1,808,765
_08415
CSW01_08420: CSW01_08420 - efflux RND transporter periplasmic adaptor subunit, at 1,808,737 to 1,809,768
_08420
CSW01_08425: CSW01_08425 - envelope stress response membrane protein PspC, at 1,809,940 to 1,810,356
_08425
CSW01_08430: CSW01_08430 - envelope stress response membrane protein PspB, at 1,810,322 to 1,810,555
_08430
CSW01_08435: CSW01_08435 - phage shock protein PspA, at 1,810,569 to 1,811,237
_08435
Position (kb)
1808
1809
1810 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1807.758 kb on + strand at 1807.766 kb on - strand at 1807.766 kb on - strand at 1807.766 kb on - strand at 1807.766 kb on - strand at 1807.911 kb on + strand, within CSW01_08415 at 1807.924 kb on - strand, within CSW01_08415 at 1807.929 kb on + strand, within CSW01_08415 at 1807.936 kb on - strand, within CSW01_08415 at 1807.947 kb on + strand, within CSW01_08415 at 1807.987 kb on + strand, within CSW01_08415 at 1807.987 kb on + strand, within CSW01_08415 at 1807.987 kb on + strand, within CSW01_08415 at 1807.987 kb on + strand, within CSW01_08415 at 1807.995 kb on - strand, within CSW01_08415 at 1807.995 kb on - strand, within CSW01_08415 at 1808.036 kb on + strand, within CSW01_08415 at 1808.039 kb on - strand, within CSW01_08415 at 1808.065 kb on + strand, within CSW01_08415 at 1808.098 kb on + strand, within CSW01_08415 at 1808.106 kb on - strand, within CSW01_08415 at 1808.106 kb on - strand, within CSW01_08415 at 1808.115 kb on + strand, within CSW01_08415 at 1808.221 kb on + strand, within CSW01_08415 at 1808.229 kb on - strand, within CSW01_08415 at 1808.231 kb on + strand, within CSW01_08415 at 1808.476 kb on - strand, within CSW01_08415 at 1808.490 kb on + strand, within CSW01_08415 at 1808.716 kb on - strand at 1808.769 kb on + strand at 1808.769 kb on + strand at 1808.777 kb on - strand at 1808.777 kb on - strand at 1808.777 kb on - strand at 1808.832 kb on - strand at 1808.886 kb on - strand, within CSW01_08420 at 1808.932 kb on + strand, within CSW01_08420 at 1808.944 kb on + strand, within CSW01_08420 at 1808.965 kb on + strand, within CSW01_08420 at 1808.987 kb on - strand, within CSW01_08420 at 1809.141 kb on + strand, within CSW01_08420 at 1809.149 kb on - strand, within CSW01_08420 at 1809.239 kb on - strand, within CSW01_08420 at 1809.264 kb on + strand, within CSW01_08420 at 1809.272 kb on - strand, within CSW01_08420 at 1809.272 kb on - strand, within CSW01_08420 at 1809.311 kb on + strand, within CSW01_08420 at 1809.319 kb on - strand, within CSW01_08420 at 1809.319 kb on - strand, within CSW01_08420 at 1809.319 kb on - strand, within CSW01_08420 at 1809.319 kb on - strand, within CSW01_08420 at 1809.356 kb on - strand, within CSW01_08420 at 1809.461 kb on + strand, within CSW01_08420 at 1809.466 kb on + strand, within CSW01_08420 at 1809.497 kb on + strand, within CSW01_08420 at 1809.500 kb on - strand, within CSW01_08420 at 1809.513 kb on + strand, within CSW01_08420 at 1809.531 kb on + strand, within CSW01_08420 at 1809.564 kb on - strand, within CSW01_08420 at 1809.648 kb on - strand, within CSW01_08420 at 1809.895 kb on + strand at 1809.935 kb on + strand at 1809.965 kb on + strand at 1809.975 kb on + strand at 1809.975 kb on + strand at 1810.129 kb on + strand, within CSW01_08425 at 1810.153 kb on + strand, within CSW01_08425 at 1810.236 kb on + strand, within CSW01_08425 at 1810.242 kb on + strand, within CSW01_08425 at 1810.248 kb on + strand, within CSW01_08425 at 1810.279 kb on - strand, within CSW01_08425 at 1810.315 kb on - strand at 1810.429 kb on - strand, within CSW01_08430 at 1810.579 kb on + strand at 1810.584 kb on + strand at 1810.591 kb on + strand at 1810.622 kb on + strand at 1810.652 kb on + strand, within CSW01_08435 at 1810.652 kb on + strand, within CSW01_08435 at 1810.660 kb on - strand, within CSW01_08435 at 1810.660 kb on - strand, within CSW01_08435
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 1,807,758 + +0.7 1,807,766 - +1.0 1,807,766 - -0.9 1,807,766 - +0.1 1,807,766 - -0.4 1,807,911 + CSW01_08415 0.23 +0.7 1,807,924 - CSW01_08415 0.24 -0.4 1,807,929 + CSW01_08415 0.25 +0.2 1,807,936 - CSW01_08415 0.25 -1.3 1,807,947 + CSW01_08415 0.26 -0.3 1,807,987 + CSW01_08415 0.30 -0.6 1,807,987 + CSW01_08415 0.30 +2.0 1,807,987 + CSW01_08415 0.30 -0.1 1,807,987 + CSW01_08415 0.30 +2.5 1,807,995 - CSW01_08415 0.31 -2.2 1,807,995 - CSW01_08415 0.31 -0.5 1,808,036 + CSW01_08415 0.34 +0.7 1,808,039 - CSW01_08415 0.35 +0.0 1,808,065 + CSW01_08415 0.37 -1.9 1,808,098 + CSW01_08415 0.40 +0.1 1,808,106 - CSW01_08415 0.41 +0.8 1,808,106 - CSW01_08415 0.41 +1.5 1,808,115 + CSW01_08415 0.41 +0.1 1,808,221 + CSW01_08415 0.51 -0.2 1,808,229 - CSW01_08415 0.52 -2.8 1,808,231 + CSW01_08415 0.52 +1.4 1,808,476 - CSW01_08415 0.74 +0.1 1,808,490 + CSW01_08415 0.75 +0.2 1,808,716 - -1.0 1,808,769 + +1.1 1,808,769 + -0.8 1,808,777 - -0.9 1,808,777 - +1.7 1,808,777 - -0.2 1,808,832 - +1.6 1,808,886 - CSW01_08420 0.14 -3.1 1,808,932 + CSW01_08420 0.19 +1.5 1,808,944 + CSW01_08420 0.20 -2.2 1,808,965 + CSW01_08420 0.22 -2.8 1,808,987 - CSW01_08420 0.24 +1.7 1,809,141 + CSW01_08420 0.39 -0.9 1,809,149 - CSW01_08420 0.40 -1.4 1,809,239 - CSW01_08420 0.49 +1.3 1,809,264 + CSW01_08420 0.51 -0.3 1,809,272 - CSW01_08420 0.52 -2.5 1,809,272 - CSW01_08420 0.52 -0.1 1,809,311 + CSW01_08420 0.56 -3.7 1,809,319 - CSW01_08420 0.56 -1.0 1,809,319 - CSW01_08420 0.56 +0.1 1,809,319 - CSW01_08420 0.56 -3.3 1,809,319 - CSW01_08420 0.56 -1.8 1,809,356 - CSW01_08420 0.60 -1.7 1,809,461 + CSW01_08420 0.70 -1.3 1,809,466 + CSW01_08420 0.71 +0.8 1,809,497 + CSW01_08420 0.74 -0.0 1,809,500 - CSW01_08420 0.74 -1.4 1,809,513 + CSW01_08420 0.75 +1.5 1,809,531 + CSW01_08420 0.77 -1.0 1,809,564 - CSW01_08420 0.80 -1.2 1,809,648 - CSW01_08420 0.88 -0.5 1,809,895 + +1.2 1,809,935 + +1.7 1,809,965 + -3.5 1,809,975 + -0.7 1,809,975 + -0.0 1,810,129 + CSW01_08425 0.45 -0.1 1,810,153 + CSW01_08425 0.51 -0.5 1,810,236 + CSW01_08425 0.71 +1.8 1,810,242 + CSW01_08425 0.72 -2.2 1,810,248 + CSW01_08425 0.74 -0.4 1,810,279 - CSW01_08425 0.81 +0.2 1,810,315 - -0.2 1,810,429 - CSW01_08430 0.46 -1.0 1,810,579 + -3.4 1,810,584 + -0.2 1,810,591 + -1.4 1,810,622 + -0.2 1,810,652 + CSW01_08435 0.12 +1.2 1,810,652 + CSW01_08435 0.12 -0.6 1,810,660 - CSW01_08435 0.14 -0.1 1,810,660 - CSW01_08435 0.14 +1.1
Or see this region's nucleotide sequence