Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07860

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07855 and CSW01_07860 overlap by 1 nucleotidesCSW01_07860 and CSW01_07865 are separated by 3 nucleotides CSW01_07855: CSW01_07855 - TolC family protein, at 1,675,501 to 1,676,760 _07855 CSW01_07860: CSW01_07860 - ABC transporter permease, at 1,676,760 to 1,677,974 _07860 CSW01_07865: CSW01_07865 - ABC transporter permease, at 1,677,978 to 1,679,255 _07865 Position (kb) 1676 1677 1678Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1675.762 kb on - strand, within CSW01_07855at 1675.805 kb on - strand, within CSW01_07855at 1675.971 kb on + strand, within CSW01_07855at 1675.971 kb on + strand, within CSW01_07855at 1675.974 kb on - strand, within CSW01_07855at 1675.979 kb on - strand, within CSW01_07855at 1675.979 kb on - strand, within CSW01_07855at 1675.979 kb on - strand, within CSW01_07855at 1676.075 kb on - strand, within CSW01_07855at 1676.168 kb on + strand, within CSW01_07855at 1676.210 kb on + strand, within CSW01_07855at 1676.218 kb on - strand, within CSW01_07855at 1676.270 kb on + strand, within CSW01_07855at 1676.276 kb on - strand, within CSW01_07855at 1676.318 kb on - strand, within CSW01_07855at 1676.557 kb on + strand, within CSW01_07855at 1676.565 kb on - strand, within CSW01_07855at 1676.747 kb on - strandat 1676.891 kb on - strand, within CSW01_07860at 1676.891 kb on - strand, within CSW01_07860at 1676.893 kb on - strand, within CSW01_07860at 1676.893 kb on - strand, within CSW01_07860at 1676.900 kb on + strand, within CSW01_07860at 1676.944 kb on + strand, within CSW01_07860at 1676.949 kb on + strand, within CSW01_07860at 1677.025 kb on - strand, within CSW01_07860at 1677.052 kb on + strand, within CSW01_07860at 1677.078 kb on - strand, within CSW01_07860at 1677.119 kb on + strand, within CSW01_07860at 1677.127 kb on - strand, within CSW01_07860at 1677.127 kb on - strand, within CSW01_07860at 1677.138 kb on + strand, within CSW01_07860at 1677.446 kb on - strand, within CSW01_07860at 1677.584 kb on - strand, within CSW01_07860at 1677.616 kb on - strand, within CSW01_07860at 1677.708 kb on - strand, within CSW01_07860at 1677.736 kb on - strand, within CSW01_07860at 1677.773 kb on - strand, within CSW01_07860at 1677.775 kb on + strand, within CSW01_07860at 1678.035 kb on - strandat 1678.039 kb on + strandat 1678.189 kb on + strand, within CSW01_07865at 1678.209 kb on - strand, within CSW01_07865at 1678.236 kb on + strand, within CSW01_07865at 1678.244 kb on - strand, within CSW01_07865at 1678.393 kb on + strand, within CSW01_07865at 1678.393 kb on + strand, within CSW01_07865at 1678.401 kb on - strand, within CSW01_07865at 1678.401 kb on - strand, within CSW01_07865at 1678.453 kb on + strand, within CSW01_07865at 1678.453 kb on + strand, within CSW01_07865at 1678.559 kb on + strand, within CSW01_07865at 1678.559 kb on + strand, within CSW01_07865at 1678.606 kb on - strand, within CSW01_07865at 1678.619 kb on - strand, within CSW01_07865at 1678.631 kb on + strand, within CSW01_07865at 1678.631 kb on + strand, within CSW01_07865at 1678.631 kb on + strand, within CSW01_07865at 1678.639 kb on - strand, within CSW01_07865at 1678.639 kb on - strand, within CSW01_07865at 1678.832 kb on + strand, within CSW01_07865at 1678.839 kb on + strand, within CSW01_07865at 1678.887 kb on + strand, within CSW01_07865at 1678.962 kb on + strand, within CSW01_07865at 1678.970 kb on + strand, within CSW01_07865

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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1,675,762 - CSW01_07855 0.21 -2.8
1,675,805 - CSW01_07855 0.24 +1.0
1,675,971 + CSW01_07855 0.37 +2.3
1,675,971 + CSW01_07855 0.37 +0.1
1,675,974 - CSW01_07855 0.38 -0.3
1,675,979 - CSW01_07855 0.38 -2.2
1,675,979 - CSW01_07855 0.38 -2.4
1,675,979 - CSW01_07855 0.38 -0.6
1,676,075 - CSW01_07855 0.46 +1.1
1,676,168 + CSW01_07855 0.53 +0.5
1,676,210 + CSW01_07855 0.56 +0.5
1,676,218 - CSW01_07855 0.57 +1.2
1,676,270 + CSW01_07855 0.61 +0.5
1,676,276 - CSW01_07855 0.62 +0.3
1,676,318 - CSW01_07855 0.65 +0.4
1,676,557 + CSW01_07855 0.84 +0.4
1,676,565 - CSW01_07855 0.84 +1.2
1,676,747 - +0.0
1,676,891 - CSW01_07860 0.11 -2.4
1,676,891 - CSW01_07860 0.11 +0.8
1,676,893 - CSW01_07860 0.11 -0.3
1,676,893 - CSW01_07860 0.11 -0.9
1,676,900 + CSW01_07860 0.12 -3.4
1,676,944 + CSW01_07860 0.15 -1.9
1,676,949 + CSW01_07860 0.16 -0.6
1,677,025 - CSW01_07860 0.22 -0.4
1,677,052 + CSW01_07860 0.24 -0.3
1,677,078 - CSW01_07860 0.26 +1.4
1,677,119 + CSW01_07860 0.30 -1.0
1,677,127 - CSW01_07860 0.30 +1.2
1,677,127 - CSW01_07860 0.30 +1.9
1,677,138 + CSW01_07860 0.31 -0.7
1,677,446 - CSW01_07860 0.56 -1.2
1,677,584 - CSW01_07860 0.68 -0.1
1,677,616 - CSW01_07860 0.70 -0.8
1,677,708 - CSW01_07860 0.78 -0.4
1,677,736 - CSW01_07860 0.80 -1.3
1,677,773 - CSW01_07860 0.83 -0.3
1,677,775 + CSW01_07860 0.84 -0.7
1,678,035 - +0.8
1,678,039 + +1.1
1,678,189 + CSW01_07865 0.17 -1.8
1,678,209 - CSW01_07865 0.18 +0.8
1,678,236 + CSW01_07865 0.20 -2.0
1,678,244 - CSW01_07865 0.21 +1.8
1,678,393 + CSW01_07865 0.32 -0.4
1,678,393 + CSW01_07865 0.32 -0.3
1,678,401 - CSW01_07865 0.33 -2.9
1,678,401 - CSW01_07865 0.33 +0.8
1,678,453 + CSW01_07865 0.37 -3.3
1,678,453 + CSW01_07865 0.37 +0.8
1,678,559 + CSW01_07865 0.45 +0.7
1,678,559 + CSW01_07865 0.45 +0.1
1,678,606 - CSW01_07865 0.49 -2.6
1,678,619 - CSW01_07865 0.50 +0.6
1,678,631 + CSW01_07865 0.51 -0.5
1,678,631 + CSW01_07865 0.51 -0.9
1,678,631 + CSW01_07865 0.51 -3.3
1,678,639 - CSW01_07865 0.52 -2.5
1,678,639 - CSW01_07865 0.52 -2.2
1,678,832 + CSW01_07865 0.67 -3.2
1,678,839 + CSW01_07865 0.67 +0.0
1,678,887 + CSW01_07865 0.71 -2.8
1,678,962 + CSW01_07865 0.77 +1.0
1,678,970 + CSW01_07865 0.78 +0.2

Or see this region's nucleotide sequence