Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05770

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05760 and CSW01_05765 overlap by 1 nucleotidesCSW01_05765 and CSW01_05770 are separated by 42 nucleotidesCSW01_05770 and CSW01_05775 overlap by 19 nucleotidesCSW01_05775 and CSW01_05780 overlap by 4 nucleotides CSW01_05760: CSW01_05760 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase, at 1,203,312 to 1,204,385 _05760 CSW01_05765: CSW01_05765 - imidazole glycerol phosphate synthase subunit HisH, at 1,204,385 to 1,204,996 _05765 CSW01_05770: CSW01_05770 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 1,205,039 to 1,205,776 _05770 CSW01_05775: CSW01_05775 - imidazole glycerol phosphate synthase cyclase subunit, at 1,205,758 to 1,206,531 _05775 CSW01_05780: CSW01_05780 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase, at 1,206,528 to 1,207,160 _05780 Position (kb) 1205 1206Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1204.044 kb on - strand, within CSW01_05760at 1204.044 kb on - strand, within CSW01_05760at 1204.080 kb on - strand, within CSW01_05760at 1204.109 kb on + strand, within CSW01_05760at 1204.111 kb on + strand, within CSW01_05760at 1204.119 kb on - strand, within CSW01_05760at 1204.177 kb on + strand, within CSW01_05760at 1204.203 kb on + strand, within CSW01_05760at 1204.209 kb on + strand, within CSW01_05760at 1204.217 kb on - strand, within CSW01_05760at 1204.260 kb on - strand, within CSW01_05760at 1204.292 kb on - strandat 1204.328 kb on + strandat 1204.328 kb on + strandat 1204.344 kb on + strandat 1204.344 kb on + strandat 1204.369 kb on + strandat 1204.369 kb on + strandat 1204.377 kb on - strandat 1204.377 kb on - strandat 1204.377 kb on - strandat 1204.687 kb on + strand, within CSW01_05765at 1204.689 kb on + strand, within CSW01_05765at 1204.689 kb on + strand, within CSW01_05765at 1204.689 kb on + strand, within CSW01_05765at 1204.689 kb on + strand, within CSW01_05765at 1204.689 kb on + strand, within CSW01_05765at 1204.689 kb on + strand, within CSW01_05765at 1204.695 kb on - strand, within CSW01_05765at 1204.696 kb on - strand, within CSW01_05765at 1204.696 kb on - strand, within CSW01_05765at 1204.697 kb on - strand, within CSW01_05765at 1204.697 kb on - strand, within CSW01_05765at 1204.697 kb on - strand, within CSW01_05765at 1204.702 kb on - strand, within CSW01_05765at 1204.702 kb on - strand, within CSW01_05765at 1204.754 kb on + strand, within CSW01_05765at 1204.774 kb on - strand, within CSW01_05765at 1204.792 kb on + strand, within CSW01_05765at 1204.798 kb on - strand, within CSW01_05765at 1204.800 kb on + strand, within CSW01_05765at 1204.800 kb on - strand, within CSW01_05765at 1204.808 kb on - strand, within CSW01_05765at 1204.808 kb on - strand, within CSW01_05765at 1204.808 kb on - strand, within CSW01_05765at 1204.808 kb on - strand, within CSW01_05765at 1204.819 kb on + strand, within CSW01_05765at 1204.822 kb on - strand, within CSW01_05765at 1204.836 kb on + strand, within CSW01_05765at 1204.836 kb on + strand, within CSW01_05765at 1204.836 kb on + strand, within CSW01_05765at 1204.837 kb on - strand, within CSW01_05765at 1204.844 kb on - strand, within CSW01_05765at 1204.844 kb on - strand, within CSW01_05765at 1204.844 kb on - strand, within CSW01_05765at 1204.863 kb on + strand, within CSW01_05765at 1204.863 kb on + strand, within CSW01_05765at 1204.863 kb on + strand, within CSW01_05765at 1204.871 kb on - strand, within CSW01_05765at 1204.881 kb on - strand, within CSW01_05765at 1204.891 kb on + strand, within CSW01_05765at 1204.926 kb on - strand, within CSW01_05765at 1204.926 kb on - strand, within CSW01_05765at 1204.928 kb on + strand, within CSW01_05765at 1204.990 kb on + strandat 1205.086 kb on + strandat 1205.094 kb on - strandat 1205.140 kb on + strand, within CSW01_05770at 1205.140 kb on + strand, within CSW01_05770at 1205.279 kb on + strand, within CSW01_05770at 1205.287 kb on - strand, within CSW01_05770at 1205.303 kb on + strand, within CSW01_05770at 1205.311 kb on + strand, within CSW01_05770at 1205.319 kb on - strand, within CSW01_05770at 1205.321 kb on + strand, within CSW01_05770at 1205.329 kb on + strand, within CSW01_05770at 1205.336 kb on + strand, within CSW01_05770at 1205.339 kb on - strand, within CSW01_05770at 1205.341 kb on + strand, within CSW01_05770at 1205.536 kb on - strand, within CSW01_05770at 1205.550 kb on + strand, within CSW01_05770at 1205.698 kb on - strand, within CSW01_05770at 1205.741 kb on + strandat 1205.850 kb on + strand, within CSW01_05775at 1205.862 kb on + strand, within CSW01_05775at 1205.876 kb on - strand, within CSW01_05775at 1205.954 kb on - strand, within CSW01_05775at 1206.025 kb on + strand, within CSW01_05775at 1206.078 kb on + strand, within CSW01_05775at 1206.128 kb on + strand, within CSW01_05775at 1206.215 kb on + strand, within CSW01_05775at 1206.253 kb on + strand, within CSW01_05775at 1206.261 kb on - strand, within CSW01_05775at 1206.323 kb on + strand, within CSW01_05775at 1206.331 kb on - strand, within CSW01_05775at 1206.331 kb on - strand, within CSW01_05775at 1206.333 kb on + strand, within CSW01_05775at 1206.333 kb on + strand, within CSW01_05775at 1206.333 kb on + strand, within CSW01_05775at 1206.333 kb on + strand, within CSW01_05775at 1206.341 kb on - strand, within CSW01_05775at 1206.354 kb on + strand, within CSW01_05775at 1206.420 kb on - strand, within CSW01_05775at 1206.447 kb on - strand, within CSW01_05775at 1206.497 kb on + strandat 1206.505 kb on - strandat 1206.527 kb on + strandat 1206.638 kb on - strand, within CSW01_05780at 1206.716 kb on - strand, within CSW01_05780at 1206.725 kb on + strand, within CSW01_05780

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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1,204,044 - CSW01_05760 0.68 +0.3
1,204,044 - CSW01_05760 0.68 -0.7
1,204,080 - CSW01_05760 0.72 +1.7
1,204,109 + CSW01_05760 0.74 -2.4
1,204,111 + CSW01_05760 0.74 +0.7
1,204,119 - CSW01_05760 0.75 -1.7
1,204,177 + CSW01_05760 0.81 +0.3
1,204,203 + CSW01_05760 0.83 -0.1
1,204,209 + CSW01_05760 0.84 +1.1
1,204,217 - CSW01_05760 0.84 +1.2
1,204,260 - CSW01_05760 0.88 +1.5
1,204,292 - +1.5
1,204,328 + +0.3
1,204,328 + +1.9
1,204,344 + -2.3
1,204,344 + +0.3
1,204,369 + +0.2
1,204,369 + +2.6
1,204,377 - -1.0
1,204,377 - -0.4
1,204,377 - +1.9
1,204,687 + CSW01_05765 0.49 -0.8
1,204,689 + CSW01_05765 0.50 +1.5
1,204,689 + CSW01_05765 0.50 -2.0
1,204,689 + CSW01_05765 0.50 -2.3
1,204,689 + CSW01_05765 0.50 +0.3
1,204,689 + CSW01_05765 0.50 +0.5
1,204,689 + CSW01_05765 0.50 -3.3
1,204,695 - CSW01_05765 0.51 -0.6
1,204,696 - CSW01_05765 0.51 -0.6
1,204,696 - CSW01_05765 0.51 -1.5
1,204,697 - CSW01_05765 0.51 +0.8
1,204,697 - CSW01_05765 0.51 -1.2
1,204,697 - CSW01_05765 0.51 -2.1
1,204,702 - CSW01_05765 0.52 -1.0
1,204,702 - CSW01_05765 0.52 +0.9
1,204,754 + CSW01_05765 0.60 -0.3
1,204,774 - CSW01_05765 0.64 -1.5
1,204,792 + CSW01_05765 0.67 +0.8
1,204,798 - CSW01_05765 0.67 -2.0
1,204,800 + CSW01_05765 0.68 -2.1
1,204,800 - CSW01_05765 0.68 +1.7
1,204,808 - CSW01_05765 0.69 +0.1
1,204,808 - CSW01_05765 0.69 +0.0
1,204,808 - CSW01_05765 0.69 -0.1
1,204,808 - CSW01_05765 0.69 +0.4
1,204,819 + CSW01_05765 0.71 +0.7
1,204,822 - CSW01_05765 0.71 +1.8
1,204,836 + CSW01_05765 0.74 -2.0
1,204,836 + CSW01_05765 0.74 +1.4
1,204,836 + CSW01_05765 0.74 -0.6
1,204,837 - CSW01_05765 0.74 +0.1
1,204,844 - CSW01_05765 0.75 -1.3
1,204,844 - CSW01_05765 0.75 +0.5
1,204,844 - CSW01_05765 0.75 -1.0
1,204,863 + CSW01_05765 0.78 +1.0
1,204,863 + CSW01_05765 0.78 +0.4
1,204,863 + CSW01_05765 0.78 -1.2
1,204,871 - CSW01_05765 0.79 -0.7
1,204,881 - CSW01_05765 0.81 -0.5
1,204,891 + CSW01_05765 0.83 -1.3
1,204,926 - CSW01_05765 0.88 +0.4
1,204,926 - CSW01_05765 0.88 +0.2
1,204,928 + CSW01_05765 0.89 +0.0
1,204,990 + +0.2
1,205,086 + -2.4
1,205,094 - +1.8
1,205,140 + CSW01_05770 0.14 +0.0
1,205,140 + CSW01_05770 0.14 -0.3
1,205,279 + CSW01_05770 0.33 +0.2
1,205,287 - CSW01_05770 0.34 +1.8
1,205,303 + CSW01_05770 0.36 -1.6
1,205,311 + CSW01_05770 0.37 -1.5
1,205,319 - CSW01_05770 0.38 -2.3
1,205,321 + CSW01_05770 0.38 +0.2
1,205,329 + CSW01_05770 0.39 -0.3
1,205,336 + CSW01_05770 0.40 -1.2
1,205,339 - CSW01_05770 0.41 -0.3
1,205,341 + CSW01_05770 0.41 -0.2
1,205,536 - CSW01_05770 0.67 +1.3
1,205,550 + CSW01_05770 0.69 -0.0
1,205,698 - CSW01_05770 0.89 -0.6
1,205,741 + -0.3
1,205,850 + CSW01_05775 0.12 +0.8
1,205,862 + CSW01_05775 0.13 -2.2
1,205,876 - CSW01_05775 0.15 -1.1
1,205,954 - CSW01_05775 0.25 +1.1
1,206,025 + CSW01_05775 0.34 -0.2
1,206,078 + CSW01_05775 0.41 +1.5
1,206,128 + CSW01_05775 0.48 +0.3
1,206,215 + CSW01_05775 0.59 -0.6
1,206,253 + CSW01_05775 0.64 -0.2
1,206,261 - CSW01_05775 0.65 -1.9
1,206,323 + CSW01_05775 0.73 +0.0
1,206,331 - CSW01_05775 0.74 +0.3
1,206,331 - CSW01_05775 0.74 +0.5
1,206,333 + CSW01_05775 0.74 -0.5
1,206,333 + CSW01_05775 0.74 +1.0
1,206,333 + CSW01_05775 0.74 -0.7
1,206,333 + CSW01_05775 0.74 -3.7
1,206,341 - CSW01_05775 0.75 -1.0
1,206,354 + CSW01_05775 0.77 +1.1
1,206,420 - CSW01_05775 0.86 -0.7
1,206,447 - CSW01_05775 0.89 -1.3
1,206,497 + +0.5
1,206,505 - -2.5
1,206,527 + +1.6
1,206,638 - CSW01_05780 0.17 +0.1
1,206,716 - CSW01_05780 0.30 -1.3
1,206,725 + CSW01_05780 0.31 +1.9

Or see this region's nucleotide sequence