Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05390

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05380 and CSW01_05385 are separated by 134 nucleotidesCSW01_05385 and CSW01_05390 are separated by 93 nucleotidesCSW01_05390 and CSW01_05395 are separated by 158 nucleotides CSW01_05380: CSW01_05380 - YkgJ family cysteine cluster protein, at 1,124,636 to 1,124,887 _05380 CSW01_05385: CSW01_05385 - YcgN family cysteine cluster protein, at 1,125,022 to 1,125,459 _05385 CSW01_05390: CSW01_05390 - YciK family oxidoreductase, at 1,125,553 to 1,126,296 _05390 CSW01_05395: CSW01_05395 - protease SohB, at 1,126,455 to 1,127,516 _05395 Position (kb) 1125 1126 1127Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1124.779 kb on + strand, within CSW01_05380at 1124.779 kb on + strand, within CSW01_05380at 1124.779 kb on + strand, within CSW01_05380at 1124.787 kb on - strand, within CSW01_05380at 1124.787 kb on - strand, within CSW01_05380at 1125.007 kb on + strandat 1125.007 kb on + strandat 1125.007 kb on + strandat 1125.007 kb on + strandat 1125.007 kb on + strandat 1125.007 kb on + strandat 1125.007 kb on + strandat 1125.007 kb on + strandat 1125.007 kb on + strandat 1125.007 kb on + strandat 1125.007 kb on + strandat 1125.015 kb on - strandat 1125.015 kb on - strandat 1125.015 kb on - strandat 1125.015 kb on - strandat 1125.015 kb on - strandat 1125.015 kb on - strandat 1125.015 kb on - strandat 1125.015 kb on - strandat 1125.100 kb on + strand, within CSW01_05385at 1125.114 kb on + strand, within CSW01_05385at 1125.129 kb on - strand, within CSW01_05385at 1125.226 kb on + strand, within CSW01_05385at 1125.226 kb on + strand, within CSW01_05385at 1125.226 kb on + strand, within CSW01_05385at 1125.234 kb on - strand, within CSW01_05385at 1125.244 kb on - strand, within CSW01_05385at 1125.244 kb on - strand, within CSW01_05385at 1125.265 kb on - strand, within CSW01_05385at 1125.287 kb on - strand, within CSW01_05385at 1125.288 kb on - strand, within CSW01_05385at 1125.288 kb on - strand, within CSW01_05385at 1125.345 kb on - strand, within CSW01_05385at 1125.447 kb on - strandat 1125.457 kb on - strandat 1125.524 kb on - strandat 1125.619 kb on - strandat 1125.619 kb on - strandat 1125.677 kb on - strand, within CSW01_05390at 1125.872 kb on + strand, within CSW01_05390at 1125.880 kb on - strand, within CSW01_05390at 1125.917 kb on + strand, within CSW01_05390at 1125.917 kb on + strand, within CSW01_05390at 1125.918 kb on - strand, within CSW01_05390at 1126.011 kb on - strand, within CSW01_05390at 1126.013 kb on - strand, within CSW01_05390at 1126.117 kb on + strand, within CSW01_05390at 1126.414 kb on + strandat 1126.422 kb on - strandat 1126.524 kb on + strandat 1126.524 kb on + strandat 1126.532 kb on - strandat 1126.953 kb on - strand, within CSW01_05395at 1126.965 kb on + strand, within CSW01_05395at 1126.967 kb on - strand, within CSW01_05395at 1126.982 kb on + strand, within CSW01_05395at 1126.982 kb on + strand, within CSW01_05395at 1127.161 kb on + strand, within CSW01_05395at 1127.185 kb on + strand, within CSW01_05395at 1127.204 kb on + strand, within CSW01_05395at 1127.237 kb on - strand, within CSW01_05395at 1127.244 kb on + strand, within CSW01_05395at 1127.295 kb on + strand, within CSW01_05395at 1127.295 kb on + strand, within CSW01_05395

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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1,124,779 + CSW01_05380 0.57 +1.2
1,124,779 + CSW01_05380 0.57 +1.4
1,124,779 + CSW01_05380 0.57 +3.7
1,124,787 - CSW01_05380 0.60 -0.4
1,124,787 - CSW01_05380 0.60 -0.7
1,125,007 + -0.8
1,125,007 + +0.4
1,125,007 + +0.2
1,125,007 + +0.6
1,125,007 + +0.3
1,125,007 + -2.2
1,125,007 + -0.5
1,125,007 + +0.6
1,125,007 + -1.1
1,125,007 + -3.6
1,125,007 + +1.1
1,125,015 - -0.8
1,125,015 - +0.5
1,125,015 - -0.6
1,125,015 - -1.4
1,125,015 - +0.2
1,125,015 - -0.0
1,125,015 - +1.0
1,125,015 - +1.4
1,125,100 + CSW01_05385 0.18 -1.5
1,125,114 + CSW01_05385 0.21 -1.0
1,125,129 - CSW01_05385 0.24 -2.4
1,125,226 + CSW01_05385 0.47 -1.3
1,125,226 + CSW01_05385 0.47 +0.1
1,125,226 + CSW01_05385 0.47 +0.4
1,125,234 - CSW01_05385 0.48 +1.4
1,125,244 - CSW01_05385 0.51 -1.9
1,125,244 - CSW01_05385 0.51 +0.5
1,125,265 - CSW01_05385 0.55 +0.7
1,125,287 - CSW01_05385 0.61 -1.1
1,125,288 - CSW01_05385 0.61 -0.4
1,125,288 - CSW01_05385 0.61 +2.1
1,125,345 - CSW01_05385 0.74 -3.0
1,125,447 - -1.3
1,125,457 - -2.5
1,125,524 - -0.7
1,125,619 - -2.7
1,125,619 - -1.3
1,125,677 - CSW01_05390 0.17 +0.6
1,125,872 + CSW01_05390 0.43 +0.2
1,125,880 - CSW01_05390 0.44 +1.2
1,125,917 + CSW01_05390 0.49 +0.8
1,125,917 + CSW01_05390 0.49 -1.9
1,125,918 - CSW01_05390 0.49 -0.5
1,126,011 - CSW01_05390 0.62 -2.0
1,126,013 - CSW01_05390 0.62 -0.7
1,126,117 + CSW01_05390 0.76 -0.9
1,126,414 + -1.6
1,126,422 - +0.1
1,126,524 + -2.2
1,126,524 + -0.3
1,126,532 - -0.9
1,126,953 - CSW01_05395 0.47 -1.3
1,126,965 + CSW01_05395 0.48 -0.7
1,126,967 - CSW01_05395 0.48 -2.0
1,126,982 + CSW01_05395 0.50 -0.8
1,126,982 + CSW01_05395 0.50 -3.1
1,127,161 + CSW01_05395 0.66 +0.4
1,127,185 + CSW01_05395 0.69 +0.5
1,127,204 + CSW01_05395 0.71 +0.4
1,127,237 - CSW01_05395 0.74 +1.1
1,127,244 + CSW01_05395 0.74 -1.7
1,127,295 + CSW01_05395 0.79 -2.2
1,127,295 + CSW01_05395 0.79 -0.1

Or see this region's nucleotide sequence