Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04590 and CSW01_04595 are separated by 21 nucleotides CSW01_04595 and CSW01_04600 are separated by 29 nucleotides CSW01_04600 and CSW01_04605 are separated by 38 nucleotides
CSW01_04590: CSW01_04590 - transcriptional regulator GcvA, at 953,753 to 954,673
_04590
CSW01_04595: CSW01_04595 - DUF423 domain-containing protein, at 954,695 to 955,081
_04595
CSW01_04600: CSW01_04600 - flap endonuclease Xni, at 955,111 to 955,962
_04600
CSW01_04605: CSW01_04605 - LOG family protein, at 956,001 to 957,374
_04605
Position (kb) 954
955
956 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 953.751 kb on - strand at 953.928 kb on + strand, within CSW01_04590 at 954.040 kb on + strand, within CSW01_04590 at 954.088 kb on - strand, within CSW01_04590 at 954.117 kb on + strand, within CSW01_04590 at 954.117 kb on + strand, within CSW01_04590 at 954.138 kb on - strand, within CSW01_04590 at 954.175 kb on - strand, within CSW01_04590 at 954.201 kb on + strand, within CSW01_04590 at 954.258 kb on + strand, within CSW01_04590 at 954.347 kb on + strand, within CSW01_04590 at 954.385 kb on + strand, within CSW01_04590 at 954.393 kb on - strand, within CSW01_04590 at 954.430 kb on - strand, within CSW01_04590 at 954.430 kb on - strand, within CSW01_04590 at 954.456 kb on + strand, within CSW01_04590 at 954.464 kb on - strand, within CSW01_04590 at 954.530 kb on + strand, within CSW01_04590 at 954.560 kb on - strand, within CSW01_04590 at 954.687 kb on + strand at 954.692 kb on + strand at 954.767 kb on - strand, within CSW01_04595 at 954.902 kb on + strand, within CSW01_04595 at 954.986 kb on + strand, within CSW01_04595 at 954.986 kb on + strand, within CSW01_04595 at 954.986 kb on + strand, within CSW01_04595 at 954.994 kb on - strand, within CSW01_04595 at 954.996 kb on + strand, within CSW01_04595 at 955.004 kb on - strand, within CSW01_04595 at 955.038 kb on - strand, within CSW01_04595 at 955.093 kb on + strand at 955.116 kb on - strand at 955.199 kb on - strand, within CSW01_04600 at 955.199 kb on - strand, within CSW01_04600 at 955.325 kb on - strand, within CSW01_04600 at 955.330 kb on - strand, within CSW01_04600 at 955.497 kb on - strand, within CSW01_04600 at 955.538 kb on + strand, within CSW01_04600 at 955.546 kb on - strand, within CSW01_04600 at 955.695 kb on - strand, within CSW01_04600 at 955.747 kb on + strand, within CSW01_04600 at 955.750 kb on + strand, within CSW01_04600 at 955.802 kb on + strand, within CSW01_04600 at 955.802 kb on + strand, within CSW01_04600
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 953,751 - -1.0 953,928 + CSW01_04590 0.19 +0.9 954,040 + CSW01_04590 0.31 +0.3 954,088 - CSW01_04590 0.36 +0.3 954,117 + CSW01_04590 0.40 -0.5 954,117 + CSW01_04590 0.40 -3.7 954,138 - CSW01_04590 0.42 -0.4 954,175 - CSW01_04590 0.46 -0.8 954,201 + CSW01_04590 0.49 +0.3 954,258 + CSW01_04590 0.55 +0.4 954,347 + CSW01_04590 0.64 +1.3 954,385 + CSW01_04590 0.69 +0.1 954,393 - CSW01_04590 0.69 -2.6 954,430 - CSW01_04590 0.74 -1.4 954,430 - CSW01_04590 0.74 -0.3 954,456 + CSW01_04590 0.76 -0.3 954,464 - CSW01_04590 0.77 +0.3 954,530 + CSW01_04590 0.84 -0.5 954,560 - CSW01_04590 0.88 -1.1 954,687 + -2.2 954,692 + -3.1 954,767 - CSW01_04595 0.19 -0.1 954,902 + CSW01_04595 0.53 -0.0 954,986 + CSW01_04595 0.75 +2.7 954,986 + CSW01_04595 0.75 +1.7 954,986 + CSW01_04595 0.75 +1.3 954,994 - CSW01_04595 0.77 -0.7 954,996 + CSW01_04595 0.78 +1.4 955,004 - CSW01_04595 0.80 +1.1 955,038 - CSW01_04595 0.89 +0.1 955,093 + +0.7 955,116 - -2.4 955,199 - CSW01_04600 0.10 -1.8 955,199 - CSW01_04600 0.10 -0.1 955,325 - CSW01_04600 0.25 +0.3 955,330 - CSW01_04600 0.26 +0.4 955,497 - CSW01_04600 0.45 -1.7 955,538 + CSW01_04600 0.50 -3.0 955,546 - CSW01_04600 0.51 -3.8 955,695 - CSW01_04600 0.69 -2.0 955,747 + CSW01_04600 0.75 +0.8 955,750 + CSW01_04600 0.75 -0.1 955,802 + CSW01_04600 0.81 -2.2 955,802 + CSW01_04600 0.81 +1.2
Or see this region's nucleotide sequence