Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04535

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04530 and CSW01_04535 are separated by 764 nucleotidesCSW01_04535 and CSW01_04540 overlap by 44 nucleotidesCSW01_04540 and CSW01_04545 are separated by 3 nucleotides CSW01_04530: CSW01_04530 - hypothetical protein, at 942,042 to 942,341 _04530 CSW01_04535: CSW01_04535 - N-acetyltransferase, at 943,106 to 943,729 _04535 CSW01_04540: CSW01_04540 - DUF3301 domain-containing protein, at 943,686 to 943,988 _04540 CSW01_04545: CSW01_04545 - DUF3549 domain-containing protein, at 943,992 to 945,029 _04545 Position (kb) 943 944Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 942.131 kb on + strand, within CSW01_04530at 942.131 kb on + strand, within CSW01_04530at 942.131 kb on + strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.180 kb on + strand, within CSW01_04530at 942.225 kb on + strand, within CSW01_04530at 942.225 kb on + strand, within CSW01_04530at 942.250 kb on + strand, within CSW01_04530at 942.250 kb on + strand, within CSW01_04530at 942.328 kb on + strandat 942.336 kb on - strandat 942.371 kb on - strandat 942.407 kb on + strandat 942.428 kb on - strandat 942.525 kb on + strandat 942.663 kb on + strandat 942.719 kb on + strandat 942.719 kb on + strandat 942.727 kb on - strandat 942.752 kb on - strandat 942.792 kb on + strandat 942.795 kb on - strandat 942.807 kb on + strandat 942.813 kb on + strandat 942.857 kb on + strandat 942.888 kb on - strandat 942.990 kb on - strandat 943.006 kb on + strandat 943.077 kb on + strandat 943.085 kb on - strandat 943.085 kb on - strandat 943.085 kb on - strandat 943.228 kb on + strand, within CSW01_04535at 943.228 kb on + strand, within CSW01_04535at 943.236 kb on - strand, within CSW01_04535at 943.387 kb on + strand, within CSW01_04535at 943.387 kb on + strand, within CSW01_04535at 943.395 kb on - strand, within CSW01_04535at 943.414 kb on - strand, within CSW01_04535at 943.445 kb on + strand, within CSW01_04535at 943.573 kb on + strand, within CSW01_04535at 943.616 kb on - strand, within CSW01_04535at 943.683 kb on + strandat 943.683 kb on + strandat 943.683 kb on + strandat 943.683 kb on + strandat 943.732 kb on - strand, within CSW01_04540at 943.809 kb on + strand, within CSW01_04540at 943.817 kb on - strand, within CSW01_04540at 943.849 kb on - strand, within CSW01_04540at 944.018 kb on + strandat 944.026 kb on - strandat 944.026 kb on - strandat 944.026 kb on - strandat 944.031 kb on + strandat 944.132 kb on + strand, within CSW01_04545at 944.140 kb on - strand, within CSW01_04545at 944.233 kb on - strand, within CSW01_04545at 944.310 kb on + strand, within CSW01_04545at 944.310 kb on + strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.318 kb on - strand, within CSW01_04545at 944.371 kb on - strand, within CSW01_04545at 944.414 kb on + strand, within CSW01_04545at 944.419 kb on + strand, within CSW01_04545at 944.421 kb on + strand, within CSW01_04545at 944.429 kb on - strand, within CSW01_04545at 944.431 kb on + strand, within CSW01_04545at 944.431 kb on + strand, within CSW01_04545at 944.439 kb on - strand, within CSW01_04545at 944.464 kb on + strand, within CSW01_04545at 944.464 kb on + strand, within CSW01_04545at 944.465 kb on - strand, within CSW01_04545at 944.482 kb on - strand, within CSW01_04545at 944.563 kb on - strand, within CSW01_04545at 944.611 kb on + strand, within CSW01_04545at 944.619 kb on - strand, within CSW01_04545at 944.726 kb on - strand, within CSW01_04545at 944.727 kb on - strand, within CSW01_04545

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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942,131 + CSW01_04530 0.30 +0.9
942,131 + CSW01_04530 0.30 -2.6
942,131 + CSW01_04530 0.30 -0.6
942,139 - CSW01_04530 0.32 -3.9
942,139 - CSW01_04530 0.32 +0.2
942,139 - CSW01_04530 0.32 -0.1
942,139 - CSW01_04530 0.32 -1.4
942,139 - CSW01_04530 0.32 -3.1
942,139 - CSW01_04530 0.32 +0.8
942,139 - CSW01_04530 0.32 +0.2
942,139 - CSW01_04530 0.32 -3.1
942,139 - CSW01_04530 0.32 -0.5
942,180 + CSW01_04530 0.46 +1.4
942,225 + CSW01_04530 0.61 -0.6
942,225 + CSW01_04530 0.61 -1.0
942,250 + CSW01_04530 0.69 -1.2
942,250 + CSW01_04530 0.69 -1.7
942,328 + -0.3
942,336 - -1.1
942,371 - +0.9
942,407 + -0.0
942,428 - -1.8
942,525 + -1.0
942,663 + +0.1
942,719 + +1.2
942,719 + -1.9
942,727 - -0.9
942,752 - -3.7
942,792 + -0.6
942,795 - -3.1
942,807 + -2.7
942,813 + +1.4
942,857 + -0.0
942,888 - -1.8
942,990 - -1.1
943,006 + -0.3
943,077 + +0.8
943,085 - -0.9
943,085 - -0.0
943,085 - +0.5
943,228 + CSW01_04535 0.20 -1.0
943,228 + CSW01_04535 0.20 +1.4
943,236 - CSW01_04535 0.21 +0.5
943,387 + CSW01_04535 0.45 -3.7
943,387 + CSW01_04535 0.45 -1.3
943,395 - CSW01_04535 0.46 +0.1
943,414 - CSW01_04535 0.49 +0.1
943,445 + CSW01_04535 0.54 -2.3
943,573 + CSW01_04535 0.75 -0.1
943,616 - CSW01_04535 0.82 -2.5
943,683 + +1.1
943,683 + -2.5
943,683 + +1.2
943,683 + +0.1
943,732 - CSW01_04540 0.15 -0.3
943,809 + CSW01_04540 0.41 +0.6
943,817 - CSW01_04540 0.43 -0.5
943,849 - CSW01_04540 0.54 -1.5
944,018 + -0.1
944,026 - +1.0
944,026 - +0.5
944,026 - -0.2
944,031 + +0.1
944,132 + CSW01_04545 0.13 -2.7
944,140 - CSW01_04545 0.14 +1.2
944,233 - CSW01_04545 0.23 -0.4
944,310 + CSW01_04545 0.31 -0.2
944,310 + CSW01_04545 0.31 -2.0
944,318 - CSW01_04545 0.31 +0.3
944,318 - CSW01_04545 0.31 +0.8
944,318 - CSW01_04545 0.31 +0.8
944,371 - CSW01_04545 0.37 +0.8
944,414 + CSW01_04545 0.41 -0.1
944,419 + CSW01_04545 0.41 -0.0
944,421 + CSW01_04545 0.41 -2.1
944,429 - CSW01_04545 0.42 +1.2
944,431 + CSW01_04545 0.42 +0.9
944,431 + CSW01_04545 0.42 +1.8
944,439 - CSW01_04545 0.43 -0.1
944,464 + CSW01_04545 0.45 +0.2
944,464 + CSW01_04545 0.45 +1.6
944,465 - CSW01_04545 0.46 +0.8
944,482 - CSW01_04545 0.47 -2.0
944,563 - CSW01_04545 0.55 +0.0
944,611 + CSW01_04545 0.60 -0.0
944,619 - CSW01_04545 0.60 +0.4
944,726 - CSW01_04545 0.71 +0.3
944,727 - CSW01_04545 0.71 -2.7

Or see this region's nucleotide sequence