Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04210

Experiment: ICP3_phage_411_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_04205 and CSW01_04210 are separated by 111 nucleotidesCSW01_04210 and CSW01_04215 are separated by 301 nucleotides CSW01_04205: CSW01_04205 - type II toxin-antitoxin system HipA family toxin, at 870,020 to 871,390 _04205 CSW01_04210: CSW01_04210 - hypothetical protein, at 871,502 to 871,684 _04210 CSW01_04215: CSW01_04215 - IS481 family transposase ISVch1, at 871,986 to 872,963 _04215 Position (kb) 871 872Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 870.544 kb on - strand, within CSW01_04205at 870.627 kb on - strand, within CSW01_04205at 870.629 kb on + strand, within CSW01_04205at 870.710 kb on - strand, within CSW01_04205at 870.758 kb on + strand, within CSW01_04205at 870.873 kb on - strand, within CSW01_04205at 870.873 kb on - strand, within CSW01_04205at 870.889 kb on + strand, within CSW01_04205at 870.899 kb on + strand, within CSW01_04205at 870.899 kb on + strand, within CSW01_04205at 870.907 kb on - strand, within CSW01_04205at 870.912 kb on + strand, within CSW01_04205at 870.930 kb on - strand, within CSW01_04205at 870.991 kb on - strand, within CSW01_04205at 871.023 kb on - strand, within CSW01_04205at 871.083 kb on + strand, within CSW01_04205at 871.083 kb on + strand, within CSW01_04205at 871.091 kb on - strand, within CSW01_04205at 871.108 kb on + strand, within CSW01_04205at 871.141 kb on + strand, within CSW01_04205at 871.149 kb on - strand, within CSW01_04205at 871.149 kb on - strand, within CSW01_04205at 871.149 kb on - strand, within CSW01_04205at 871.149 kb on - strand, within CSW01_04205at 871.173 kb on + strand, within CSW01_04205at 871.232 kb on - strand, within CSW01_04205at 871.269 kb on + strandat 871.316 kb on + strandat 871.347 kb on + strandat 871.391 kb on - strandat 871.536 kb on + strand, within CSW01_04210at 871.544 kb on - strand, within CSW01_04210at 871.554 kb on + strand, within CSW01_04210at 871.572 kb on + strand, within CSW01_04210at 871.580 kb on + strand, within CSW01_04210at 871.619 kb on + strand, within CSW01_04210at 871.664 kb on + strand, within CSW01_04210at 871.717 kb on + strandat 871.717 kb on + strandat 871.717 kb on + strandat 871.725 kb on - strandat 871.725 kb on - strandat 871.915 kb on + strandat 871.923 kb on - strandat 871.936 kb on + strandat 871.936 kb on + strandat 871.936 kb on + strandat 871.944 kb on - strandat 872.007 kb on + strandat 872.015 kb on - strandat 872.015 kb on - strandat 872.015 kb on - strandat 872.016 kb on - strandat 872.107 kb on + strand, within CSW01_04215at 872.130 kb on + strand, within CSW01_04215at 872.138 kb on - strand, within CSW01_04215at 872.138 kb on - strand, within CSW01_04215at 872.196 kb on + strand, within CSW01_04215at 872.253 kb on + strand, within CSW01_04215at 872.280 kb on - strand, within CSW01_04215at 872.289 kb on + strand, within CSW01_04215at 872.293 kb on - strand, within CSW01_04215at 872.312 kb on - strand, within CSW01_04215at 872.373 kb on - strand, within CSW01_04215at 872.394 kb on + strand, within CSW01_04215at 872.408 kb on + strand, within CSW01_04215at 872.435 kb on + strand, within CSW01_04215at 872.435 kb on + strand, within CSW01_04215at 872.443 kb on - strand, within CSW01_04215at 872.443 kb on - strand, within CSW01_04215at 872.469 kb on + strand, within CSW01_04215at 872.485 kb on - strand, within CSW01_04215at 872.485 kb on - strand, within CSW01_04215at 872.485 kb on - strand, within CSW01_04215at 872.568 kb on + strand, within CSW01_04215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
remove
870,544 - CSW01_04205 0.38 +1.4
870,627 - CSW01_04205 0.44 -3.3
870,629 + CSW01_04205 0.44 -3.0
870,710 - CSW01_04205 0.50 +1.0
870,758 + CSW01_04205 0.54 -0.9
870,873 - CSW01_04205 0.62 -2.6
870,873 - CSW01_04205 0.62 -1.8
870,889 + CSW01_04205 0.63 -3.1
870,899 + CSW01_04205 0.64 -0.4
870,899 + CSW01_04205 0.64 -2.9
870,907 - CSW01_04205 0.65 +0.7
870,912 + CSW01_04205 0.65 -1.7
870,930 - CSW01_04205 0.66 -0.0
870,991 - CSW01_04205 0.71 -0.7
871,023 - CSW01_04205 0.73 -2.5
871,083 + CSW01_04205 0.78 +1.3
871,083 + CSW01_04205 0.78 -0.0
871,091 - CSW01_04205 0.78 -3.2
871,108 + CSW01_04205 0.79 +1.5
871,141 + CSW01_04205 0.82 -3.5
871,149 - CSW01_04205 0.82 -1.8
871,149 - CSW01_04205 0.82 -0.2
871,149 - CSW01_04205 0.82 +1.0
871,149 - CSW01_04205 0.82 -0.8
871,173 + CSW01_04205 0.84 -4.1
871,232 - CSW01_04205 0.88 -1.1
871,269 + -0.6
871,316 + +1.2
871,347 + -1.4
871,391 - -2.4
871,536 + CSW01_04210 0.19 -3.2
871,544 - CSW01_04210 0.23 -0.8
871,554 + CSW01_04210 0.28 -0.2
871,572 + CSW01_04210 0.38 -1.7
871,580 + CSW01_04210 0.43 -1.2
871,619 + CSW01_04210 0.64 +0.8
871,664 + CSW01_04210 0.89 +0.3
871,717 + +2.9
871,717 + -0.9
871,717 + +0.1
871,725 - -0.2
871,725 - +0.5
871,915 + +0.9
871,923 - -0.5
871,936 + -1.2
871,936 + +1.4
871,936 + -1.9
871,944 - -3.0
872,007 + +0.5
872,015 - -1.7
872,015 - +0.0
872,015 - +1.1
872,016 - +1.1
872,107 + CSW01_04215 0.12 +1.2
872,130 + CSW01_04215 0.15 +2.7
872,138 - CSW01_04215 0.16 -3.1
872,138 - CSW01_04215 0.16 -1.6
872,196 + CSW01_04215 0.21 +1.7
872,253 + CSW01_04215 0.27 -1.5
872,280 - CSW01_04215 0.30 -0.9
872,289 + CSW01_04215 0.31 -1.2
872,293 - CSW01_04215 0.31 -1.8
872,312 - CSW01_04215 0.33 +0.5
872,373 - CSW01_04215 0.40 +0.4
872,394 + CSW01_04215 0.42 -0.4
872,408 + CSW01_04215 0.43 +1.5
872,435 + CSW01_04215 0.46 +0.8
872,435 + CSW01_04215 0.46 +0.1
872,443 - CSW01_04215 0.47 -0.4
872,443 - CSW01_04215 0.47 -1.4
872,469 + CSW01_04215 0.49 -0.4
872,485 - CSW01_04215 0.51 -2.8
872,485 - CSW01_04215 0.51 -1.8
872,485 - CSW01_04215 0.51 -0.2
872,568 + CSW01_04215 0.60 +1.5

Or see this region's nucleotide sequence