Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04145

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04140 and CSW01_04145 are separated by 346 nucleotidesCSW01_04145 and CSW01_04150 are separated by 74 nucleotides CSW01_04140: CSW01_04140 - triphosphoribosyl-dephospho-CoA synthase, at 856,243 to 857,184 _04140 CSW01_04145: CSW01_04145 - transporter, at 857,531 to 857,929 _04145 CSW01_04150: CSW01_04150 - RNA methyltransferase, at 858,004 to 858,777 _04150 Position (kb) 857 858Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 856.544 kb on + strand, within CSW01_04140at 856.573 kb on - strand, within CSW01_04140at 856.599 kb on + strand, within CSW01_04140at 856.600 kb on - strand, within CSW01_04140at 856.667 kb on - strand, within CSW01_04140at 856.674 kb on + strand, within CSW01_04140at 856.692 kb on + strand, within CSW01_04140at 856.692 kb on + strand, within CSW01_04140at 856.743 kb on + strand, within CSW01_04140at 856.743 kb on + strand, within CSW01_04140at 856.743 kb on + strand, within CSW01_04140at 856.751 kb on - strand, within CSW01_04140at 856.755 kb on + strand, within CSW01_04140at 856.797 kb on + strand, within CSW01_04140at 856.812 kb on - strand, within CSW01_04140at 856.812 kb on - strand, within CSW01_04140at 856.812 kb on - strand, within CSW01_04140at 856.831 kb on + strand, within CSW01_04140at 856.837 kb on + strand, within CSW01_04140at 856.839 kb on - strand, within CSW01_04140at 856.896 kb on + strand, within CSW01_04140at 856.896 kb on + strand, within CSW01_04140at 856.904 kb on - strand, within CSW01_04140at 856.904 kb on - strand, within CSW01_04140at 856.906 kb on + strand, within CSW01_04140at 856.912 kb on + strand, within CSW01_04140at 856.995 kb on - strand, within CSW01_04140at 856.995 kb on - strand, within CSW01_04140at 857.061 kb on + strand, within CSW01_04140at 857.084 kb on - strand, within CSW01_04140at 857.100 kb on + strandat 857.165 kb on + strandat 857.178 kb on + strandat 857.178 kb on + strandat 857.186 kb on - strandat 857.221 kb on - strandat 857.482 kb on + strandat 857.602 kb on + strand, within CSW01_04145at 857.610 kb on - strand, within CSW01_04145at 857.612 kb on + strand, within CSW01_04145at 857.648 kb on - strand, within CSW01_04145at 857.675 kb on + strand, within CSW01_04145at 857.689 kb on + strand, within CSW01_04145at 857.720 kb on + strand, within CSW01_04145at 857.751 kb on + strand, within CSW01_04145at 857.751 kb on + strand, within CSW01_04145at 857.751 kb on + strand, within CSW01_04145at 857.751 kb on + strand, within CSW01_04145at 857.751 kb on + strand, within CSW01_04145at 857.751 kb on + strand, within CSW01_04145at 857.759 kb on - strand, within CSW01_04145at 857.759 kb on - strand, within CSW01_04145at 857.759 kb on - strand, within CSW01_04145at 857.772 kb on - strand, within CSW01_04145at 857.783 kb on + strand, within CSW01_04145at 857.810 kb on - strand, within CSW01_04145at 857.829 kb on + strand, within CSW01_04145at 857.854 kb on - strand, within CSW01_04145at 857.932 kb on - strandat 857.991 kb on - strandat 857.993 kb on - strandat 857.993 kb on - strandat 857.993 kb on - strandat 858.085 kb on - strand, within CSW01_04150at 858.085 kb on - strand, within CSW01_04150at 858.096 kb on + strand, within CSW01_04150at 858.104 kb on - strand, within CSW01_04150at 858.110 kb on + strand, within CSW01_04150at 858.111 kb on - strand, within CSW01_04150at 858.118 kb on - strand, within CSW01_04150at 858.141 kb on + strand, within CSW01_04150at 858.150 kb on + strand, within CSW01_04150at 858.244 kb on - strand, within CSW01_04150at 858.330 kb on + strand, within CSW01_04150at 858.337 kb on + strand, within CSW01_04150at 858.351 kb on - strand, within CSW01_04150at 858.465 kb on + strand, within CSW01_04150at 858.489 kb on + strand, within CSW01_04150at 858.502 kb on - strand, within CSW01_04150at 858.581 kb on + strand, within CSW01_04150at 858.588 kb on - strand, within CSW01_04150at 858.590 kb on - strand, within CSW01_04150at 858.655 kb on - strand, within CSW01_04150at 858.672 kb on - strand, within CSW01_04150at 858.692 kb on - strand, within CSW01_04150at 858.720 kb on - strandat 858.902 kb on + strandat 858.902 kb on + strandat 858.902 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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856,544 + CSW01_04140 0.32 +1.4
856,573 - CSW01_04140 0.35 -1.6
856,599 + CSW01_04140 0.38 +1.8
856,600 - CSW01_04140 0.38 -1.2
856,667 - CSW01_04140 0.45 +0.2
856,674 + CSW01_04140 0.46 +1.4
856,692 + CSW01_04140 0.48 +0.1
856,692 + CSW01_04140 0.48 +2.0
856,743 + CSW01_04140 0.53 -1.2
856,743 + CSW01_04140 0.53 +0.4
856,743 + CSW01_04140 0.53 -2.5
856,751 - CSW01_04140 0.54 -0.0
856,755 + CSW01_04140 0.54 -2.7
856,797 + CSW01_04140 0.59 -3.6
856,812 - CSW01_04140 0.60 +0.1
856,812 - CSW01_04140 0.60 -0.1
856,812 - CSW01_04140 0.60 -0.6
856,831 + CSW01_04140 0.62 +1.6
856,837 + CSW01_04140 0.63 -2.5
856,839 - CSW01_04140 0.63 -0.6
856,896 + CSW01_04140 0.69 -2.2
856,896 + CSW01_04140 0.69 +0.2
856,904 - CSW01_04140 0.70 -0.7
856,904 - CSW01_04140 0.70 -0.9
856,906 + CSW01_04140 0.70 -2.4
856,912 + CSW01_04140 0.71 -2.9
856,995 - CSW01_04140 0.80 +2.2
856,995 - CSW01_04140 0.80 +0.1
857,061 + CSW01_04140 0.87 +1.5
857,084 - CSW01_04140 0.89 +0.7
857,100 + +1.7
857,165 + -2.8
857,178 + +1.4
857,178 + -1.8
857,186 - -1.8
857,221 - +0.4
857,482 + -0.2
857,602 + CSW01_04145 0.18 -2.6
857,610 - CSW01_04145 0.20 -3.4
857,612 + CSW01_04145 0.20 +0.9
857,648 - CSW01_04145 0.29 +1.4
857,675 + CSW01_04145 0.36 -2.5
857,689 + CSW01_04145 0.40 +1.7
857,720 + CSW01_04145 0.47 -2.0
857,751 + CSW01_04145 0.55 -2.6
857,751 + CSW01_04145 0.55 -1.5
857,751 + CSW01_04145 0.55 -0.8
857,751 + CSW01_04145 0.55 -1.1
857,751 + CSW01_04145 0.55 +0.4
857,751 + CSW01_04145 0.55 +0.9
857,759 - CSW01_04145 0.57 -2.1
857,759 - CSW01_04145 0.57 +0.6
857,759 - CSW01_04145 0.57 -1.6
857,772 - CSW01_04145 0.60 -1.7
857,783 + CSW01_04145 0.63 -2.9
857,810 - CSW01_04145 0.70 -0.5
857,829 + CSW01_04145 0.75 +0.1
857,854 - CSW01_04145 0.81 -0.7
857,932 - -4.2
857,991 - +0.4
857,993 - -0.1
857,993 - -1.4
857,993 - -0.2
858,085 - CSW01_04150 0.10 -1.9
858,085 - CSW01_04150 0.10 -4.6
858,096 + CSW01_04150 0.12 -1.7
858,104 - CSW01_04150 0.13 +0.9
858,110 + CSW01_04150 0.14 -3.1
858,111 - CSW01_04150 0.14 -0.1
858,118 - CSW01_04150 0.15 +1.6
858,141 + CSW01_04150 0.18 -0.1
858,150 + CSW01_04150 0.19 +0.9
858,244 - CSW01_04150 0.31 -0.8
858,330 + CSW01_04150 0.42 -1.4
858,337 + CSW01_04150 0.43 -1.7
858,351 - CSW01_04150 0.45 +0.8
858,465 + CSW01_04150 0.60 -1.4
858,489 + CSW01_04150 0.63 -0.8
858,502 - CSW01_04150 0.64 -3.5
858,581 + CSW01_04150 0.75 -3.9
858,588 - CSW01_04150 0.75 +0.7
858,590 - CSW01_04150 0.76 -0.3
858,655 - CSW01_04150 0.84 -1.4
858,672 - CSW01_04150 0.86 -3.2
858,692 - CSW01_04150 0.89 -2.2
858,720 - -0.0
858,902 + -4.6
858,902 + -2.1
858,902 + -0.7

Or see this region's nucleotide sequence