Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04050

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04040 and CSW01_04045 overlap by 70 nucleotidesCSW01_04045 and CSW01_04050 are separated by 9 nucleotidesCSW01_04050 and CSW01_04055 are separated by 217 nucleotides CSW01_04040: CSW01_04040 - ABC transporter ATP-binding protein, at 834,415 to 835,254 _04040 CSW01_04045: CSW01_04045 - vibriobactin biosynthesis 4'-phosphopantetheinyl transferase VibD, at 835,185 to 835,970 _04045 CSW01_04050: CSW01_04050 - LysR family transcriptional regulator, at 835,980 to 836,906 _04050 CSW01_04055: CSW01_04055 - alkyl/aryl-sulfatase, at 837,124 to 839,106 _04055 Position (kb) 835 836 837Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 834.999 kb on + strand, within CSW01_04040at 835.033 kb on + strand, within CSW01_04040at 835.033 kb on + strand, within CSW01_04040at 835.041 kb on - strand, within CSW01_04040at 835.042 kb on - strand, within CSW01_04040at 835.059 kb on - strand, within CSW01_04040at 835.090 kb on + strand, within CSW01_04040at 835.111 kb on + strand, within CSW01_04040at 835.151 kb on + strand, within CSW01_04040at 835.159 kb on - strand, within CSW01_04040at 835.159 kb on - strand, within CSW01_04040at 835.227 kb on - strandat 835.227 kb on - strandat 835.227 kb on - strandat 835.319 kb on + strand, within CSW01_04045at 835.357 kb on + strand, within CSW01_04045at 835.365 kb on - strand, within CSW01_04045at 835.365 kb on - strand, within CSW01_04045at 835.365 kb on - strand, within CSW01_04045at 835.375 kb on + strand, within CSW01_04045at 835.383 kb on - strand, within CSW01_04045at 835.383 kb on - strand, within CSW01_04045at 835.388 kb on - strand, within CSW01_04045at 835.393 kb on - strand, within CSW01_04045at 835.393 kb on - strand, within CSW01_04045at 835.393 kb on - strand, within CSW01_04045at 835.406 kb on - strand, within CSW01_04045at 835.425 kb on + strand, within CSW01_04045at 835.466 kb on + strand, within CSW01_04045at 835.466 kb on + strand, within CSW01_04045at 835.466 kb on + strand, within CSW01_04045at 835.466 kb on + strand, within CSW01_04045at 835.467 kb on + strand, within CSW01_04045at 835.474 kb on - strand, within CSW01_04045at 835.475 kb on - strand, within CSW01_04045at 835.516 kb on - strand, within CSW01_04045at 835.516 kb on - strand, within CSW01_04045at 835.516 kb on - strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.577 kb on - strand, within CSW01_04045at 835.577 kb on - strand, within CSW01_04045at 835.579 kb on - strand, within CSW01_04045at 835.579 kb on - strand, within CSW01_04045at 835.579 kb on - strand, within CSW01_04045at 835.586 kb on - strand, within CSW01_04045at 835.594 kb on - strand, within CSW01_04045at 835.631 kb on - strand, within CSW01_04045at 835.650 kb on + strand, within CSW01_04045at 835.662 kb on + strand, within CSW01_04045at 835.662 kb on + strand, within CSW01_04045at 835.662 kb on + strand, within CSW01_04045at 835.662 kb on + strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.742 kb on + strand, within CSW01_04045at 835.761 kb on + strand, within CSW01_04045at 835.769 kb on + strand, within CSW01_04045at 835.796 kb on + strand, within CSW01_04045at 835.796 kb on + strand, within CSW01_04045at 835.807 kb on - strand, within CSW01_04045at 835.844 kb on + strand, within CSW01_04045at 835.852 kb on + strand, within CSW01_04045at 835.857 kb on + strand, within CSW01_04045at 835.867 kb on + strand, within CSW01_04045at 835.872 kb on - strand, within CSW01_04045at 835.872 kb on - strand, within CSW01_04045at 835.910 kb on - strandat 835.939 kb on - strandat 836.059 kb on - strandat 836.073 kb on + strand, within CSW01_04050at 836.166 kb on - strand, within CSW01_04050at 836.166 kb on - strand, within CSW01_04050at 836.289 kb on + strand, within CSW01_04050at 836.289 kb on + strand, within CSW01_04050at 836.294 kb on + strand, within CSW01_04050at 836.417 kb on - strand, within CSW01_04050at 836.417 kb on - strand, within CSW01_04050at 836.430 kb on + strand, within CSW01_04050at 836.435 kb on + strand, within CSW01_04050at 836.495 kb on + strand, within CSW01_04050at 836.510 kb on - strand, within CSW01_04050at 836.510 kb on - strand, within CSW01_04050at 836.568 kb on + strand, within CSW01_04050at 836.576 kb on - strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.633 kb on + strand, within CSW01_04050at 836.714 kb on - strand, within CSW01_04050at 836.716 kb on + strand, within CSW01_04050at 836.716 kb on + strand, within CSW01_04050at 836.716 kb on + strand, within CSW01_04050at 836.719 kb on - strand, within CSW01_04050at 836.724 kb on - strand, within CSW01_04050at 836.724 kb on - strand, within CSW01_04050at 836.724 kb on - strand, within CSW01_04050at 836.724 kb on - strand, within CSW01_04050at 836.746 kb on - strand, within CSW01_04050at 836.799 kb on + strand, within CSW01_04050at 836.953 kb on + strandat 837.076 kb on + strandat 837.214 kb on + strandat 837.227 kb on + strandat 837.255 kb on - strandat 837.312 kb on - strandat 837.462 kb on + strand, within CSW01_04055at 837.513 kb on + strand, within CSW01_04055at 837.576 kb on + strand, within CSW01_04055at 837.610 kb on - strand, within CSW01_04055at 837.624 kb on + strand, within CSW01_04055at 837.629 kb on + strand, within CSW01_04055at 837.634 kb on + strand, within CSW01_04055at 837.639 kb on + strand, within CSW01_04055at 837.645 kb on - strand, within CSW01_04055at 837.645 kb on - strand, within CSW01_04055at 837.645 kb on - strand, within CSW01_04055at 837.645 kb on - strand, within CSW01_04055at 837.673 kb on + strand, within CSW01_04055at 837.673 kb on + strand, within CSW01_04055at 837.681 kb on - strand, within CSW01_04055at 837.702 kb on - strand, within CSW01_04055at 837.843 kb on + strand, within CSW01_04055at 837.885 kb on - strand, within CSW01_04055

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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834,999 + CSW01_04040 0.70 -1.3
835,033 + CSW01_04040 0.74 +2.4
835,033 + CSW01_04040 0.74 -1.1
835,041 - CSW01_04040 0.75 -1.4
835,042 - CSW01_04040 0.75 +1.1
835,059 - CSW01_04040 0.77 -1.3
835,090 + CSW01_04040 0.80 +0.4
835,111 + CSW01_04040 0.83 +1.7
835,151 + CSW01_04040 0.88 -2.7
835,159 - CSW01_04040 0.89 +0.6
835,159 - CSW01_04040 0.89 -2.4
835,227 - +0.4
835,227 - -0.7
835,227 - -2.8
835,319 + CSW01_04045 0.17 +1.8
835,357 + CSW01_04045 0.22 +3.7
835,365 - CSW01_04045 0.23 +0.3
835,365 - CSW01_04045 0.23 +1.5
835,365 - CSW01_04045 0.23 -0.3
835,375 + CSW01_04045 0.24 -1.8
835,383 - CSW01_04045 0.25 +0.5
835,383 - CSW01_04045 0.25 +2.5
835,388 - CSW01_04045 0.26 -2.4
835,393 - CSW01_04045 0.26 +1.2
835,393 - CSW01_04045 0.26 -0.3
835,393 - CSW01_04045 0.26 -1.7
835,406 - CSW01_04045 0.28 +0.1
835,425 + CSW01_04045 0.31 -2.7
835,466 + CSW01_04045 0.36 +0.9
835,466 + CSW01_04045 0.36 +1.8
835,466 + CSW01_04045 0.36 -1.4
835,466 + CSW01_04045 0.36 -0.6
835,467 + CSW01_04045 0.36 +0.4
835,474 - CSW01_04045 0.37 +1.4
835,475 - CSW01_04045 0.37 -0.8
835,516 - CSW01_04045 0.42 +2.9
835,516 - CSW01_04045 0.42 +0.7
835,516 - CSW01_04045 0.42 +1.0
835,571 + CSW01_04045 0.49 -3.0
835,571 + CSW01_04045 0.49 +0.2
835,571 + CSW01_04045 0.49 -1.3
835,571 + CSW01_04045 0.49 +1.7
835,571 + CSW01_04045 0.49 -2.1
835,571 + CSW01_04045 0.49 +0.0
835,577 - CSW01_04045 0.50 +2.0
835,577 - CSW01_04045 0.50 +1.4
835,579 - CSW01_04045 0.50 -1.0
835,579 - CSW01_04045 0.50 +0.7
835,579 - CSW01_04045 0.50 +0.3
835,586 - CSW01_04045 0.51 -3.8
835,594 - CSW01_04045 0.52 -2.5
835,631 - CSW01_04045 0.57 +0.9
835,650 + CSW01_04045 0.59 +1.4
835,662 + CSW01_04045 0.61 -3.2
835,662 + CSW01_04045 0.61 +1.0
835,662 + CSW01_04045 0.61 +0.2
835,662 + CSW01_04045 0.61 -2.2
835,670 - CSW01_04045 0.62 +1.8
835,670 - CSW01_04045 0.62 -0.8
835,670 - CSW01_04045 0.62 +1.2
835,670 - CSW01_04045 0.62 -1.3
835,670 - CSW01_04045 0.62 -0.1
835,670 - CSW01_04045 0.62 -0.6
835,670 - CSW01_04045 0.62 -3.1
835,670 - CSW01_04045 0.62 -0.3
835,670 - CSW01_04045 0.62 -3.0
835,670 - CSW01_04045 0.62 +0.8
835,670 - CSW01_04045 0.62 +0.3
835,670 - CSW01_04045 0.62 -1.0
835,670 - CSW01_04045 0.62 +0.2
835,670 - CSW01_04045 0.62 -1.6
835,670 - CSW01_04045 0.62 +0.1
835,742 + CSW01_04045 0.71 -0.4
835,761 + CSW01_04045 0.73 -2.1
835,769 + CSW01_04045 0.74 -2.3
835,796 + CSW01_04045 0.78 +0.5
835,796 + CSW01_04045 0.78 +0.2
835,807 - CSW01_04045 0.79 +1.6
835,844 + CSW01_04045 0.84 -2.9
835,852 + CSW01_04045 0.85 +2.3
835,857 + CSW01_04045 0.85 +0.4
835,867 + CSW01_04045 0.87 +1.5
835,872 - CSW01_04045 0.87 +0.7
835,872 - CSW01_04045 0.87 -0.4
835,910 - -1.8
835,939 - +0.8
836,059 - +1.2
836,073 + CSW01_04050 0.10 -0.4
836,166 - CSW01_04050 0.20 +0.6
836,166 - CSW01_04050 0.20 +0.3
836,289 + CSW01_04050 0.33 -0.0
836,289 + CSW01_04050 0.33 +1.2
836,294 + CSW01_04050 0.34 -0.3
836,417 - CSW01_04050 0.47 +1.0
836,417 - CSW01_04050 0.47 +1.7
836,430 + CSW01_04050 0.49 +1.7
836,435 + CSW01_04050 0.49 +3.6
836,495 + CSW01_04050 0.56 +0.0
836,510 - CSW01_04050 0.57 -1.3
836,510 - CSW01_04050 0.57 -1.1
836,568 + CSW01_04050 0.63 +0.7
836,576 - CSW01_04050 0.64 +0.9
836,580 + CSW01_04050 0.65 -0.6
836,580 + CSW01_04050 0.65 +2.4
836,580 + CSW01_04050 0.65 -1.6
836,580 + CSW01_04050 0.65 -1.1
836,580 + CSW01_04050 0.65 +1.4
836,580 + CSW01_04050 0.65 +0.4
836,580 + CSW01_04050 0.65 +0.2
836,588 - CSW01_04050 0.66 +0.3
836,588 - CSW01_04050 0.66 -1.8
836,588 - CSW01_04050 0.66 +1.4
836,588 - CSW01_04050 0.66 -3.0
836,588 - CSW01_04050 0.66 +0.5
836,588 - CSW01_04050 0.66 +1.0
836,588 - CSW01_04050 0.66 -2.1
836,633 + CSW01_04050 0.70 +0.3
836,714 - CSW01_04050 0.79 +1.6
836,716 + CSW01_04050 0.79 +1.7
836,716 + CSW01_04050 0.79 -0.1
836,716 + CSW01_04050 0.79 +0.6
836,719 - CSW01_04050 0.80 -0.5
836,724 - CSW01_04050 0.80 -3.0
836,724 - CSW01_04050 0.80 -0.5
836,724 - CSW01_04050 0.80 +0.8
836,724 - CSW01_04050 0.80 -0.2
836,746 - CSW01_04050 0.83 -2.3
836,799 + CSW01_04050 0.88 -0.3
836,953 + -3.1
837,076 + +0.8
837,214 + -0.1
837,227 + -2.9
837,255 - -1.4
837,312 - +0.4
837,462 + CSW01_04055 0.17 +1.2
837,513 + CSW01_04055 0.20 -0.3
837,576 + CSW01_04055 0.23 -3.0
837,610 - CSW01_04055 0.25 +1.1
837,624 + CSW01_04055 0.25 +0.1
837,629 + CSW01_04055 0.25 -0.0
837,634 + CSW01_04055 0.26 -2.2
837,639 + CSW01_04055 0.26 -0.4
837,645 - CSW01_04055 0.26 -0.3
837,645 - CSW01_04055 0.26 -2.9
837,645 - CSW01_04055 0.26 +0.7
837,645 - CSW01_04055 0.26 +0.8
837,673 + CSW01_04055 0.28 -0.8
837,673 + CSW01_04055 0.28 +0.0
837,681 - CSW01_04055 0.28 +0.8
837,702 - CSW01_04055 0.29 +1.1
837,843 + CSW01_04055 0.36 +0.9
837,885 - CSW01_04055 0.38 -0.1

Or see this region's nucleotide sequence