Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03680

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03675 and CSW01_03680 are separated by 142 nucleotidesCSW01_03680 and CSW01_03685 are separated by 239 nucleotidesCSW01_03685 and CSW01_03690 are separated by 401 nucleotides CSW01_03675: CSW01_03675 - norspermidine sensor, at 752,350 to 753,429 _03675 CSW01_03680: CSW01_03680 - bifunctional chorismate mutase/prephenate dehydratase, at 753,572 to 754,747 _03680 CSW01_03685: CSW01_03685 - ribosomal subunit interface protein, at 754,987 to 755,313 _03685 CSW01_03690: CSW01_03690 - outer membrane protein assembly factor BamD, at 755,715 to 756,440 _03690 Position (kb) 753 754 755Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 752.599 kb on + strand, within CSW01_03675at 752.607 kb on - strand, within CSW01_03675at 752.635 kb on + strand, within CSW01_03675at 752.694 kb on - strand, within CSW01_03675at 752.694 kb on - strand, within CSW01_03675at 752.694 kb on - strand, within CSW01_03675at 752.729 kb on + strand, within CSW01_03675at 752.763 kb on + strand, within CSW01_03675at 752.767 kb on - strand, within CSW01_03675at 752.771 kb on - strand, within CSW01_03675at 752.782 kb on + strand, within CSW01_03675at 752.782 kb on + strand, within CSW01_03675at 752.782 kb on + strand, within CSW01_03675at 752.782 kb on + strand, within CSW01_03675at 752.790 kb on - strand, within CSW01_03675at 752.790 kb on - strand, within CSW01_03675at 752.805 kb on + strand, within CSW01_03675at 752.898 kb on - strand, within CSW01_03675at 752.902 kb on + strand, within CSW01_03675at 752.904 kb on + strand, within CSW01_03675at 752.912 kb on - strand, within CSW01_03675at 752.928 kb on - strand, within CSW01_03675at 752.929 kb on - strand, within CSW01_03675at 752.929 kb on - strand, within CSW01_03675at 752.949 kb on + strand, within CSW01_03675at 753.067 kb on - strand, within CSW01_03675at 753.194 kb on - strand, within CSW01_03675at 753.251 kb on - strand, within CSW01_03675at 753.361 kb on - strandat 753.491 kb on - strandat 753.555 kb on - strandat 753.602 kb on - strandat 753.602 kb on - strandat 753.612 kb on + strandat 753.649 kb on - strandat 753.692 kb on - strand, within CSW01_03680at 753.713 kb on + strand, within CSW01_03680at 753.774 kb on - strand, within CSW01_03680at 753.806 kb on - strand, within CSW01_03680at 753.872 kb on + strand, within CSW01_03680at 754.002 kb on + strand, within CSW01_03680at 754.094 kb on + strand, within CSW01_03680at 754.104 kb on - strand, within CSW01_03680at 754.116 kb on + strand, within CSW01_03680at 754.124 kb on - strand, within CSW01_03680at 754.171 kb on + strand, within CSW01_03680at 754.171 kb on + strand, within CSW01_03680at 754.174 kb on + strand, within CSW01_03680at 754.179 kb on - strand, within CSW01_03680at 754.183 kb on + strand, within CSW01_03680at 754.197 kb on + strand, within CSW01_03680at 754.197 kb on + strand, within CSW01_03680at 754.197 kb on + strand, within CSW01_03680at 754.197 kb on + strand, within CSW01_03680at 754.197 kb on + strand, within CSW01_03680at 754.197 kb on + strand, within CSW01_03680at 754.197 kb on + strand, within CSW01_03680at 754.200 kb on - strand, within CSW01_03680at 754.202 kb on + strand, within CSW01_03680at 754.205 kb on - strand, within CSW01_03680at 754.207 kb on + strand, within CSW01_03680at 754.207 kb on + strand, within CSW01_03680at 754.209 kb on + strand, within CSW01_03680at 754.209 kb on + strand, within CSW01_03680at 754.210 kb on - strand, within CSW01_03680at 754.246 kb on + strand, within CSW01_03680at 754.254 kb on - strand, within CSW01_03680at 754.259 kb on - strand, within CSW01_03680at 754.318 kb on + strand, within CSW01_03680at 754.353 kb on + strand, within CSW01_03680at 754.387 kb on + strand, within CSW01_03680at 754.395 kb on - strand, within CSW01_03680at 754.422 kb on + strand, within CSW01_03680at 754.430 kb on - strand, within CSW01_03680at 754.435 kb on + strand, within CSW01_03680at 754.435 kb on + strand, within CSW01_03680at 754.443 kb on - strand, within CSW01_03680at 754.443 kb on - strand, within CSW01_03680at 754.443 kb on - strand, within CSW01_03680at 754.443 kb on - strand, within CSW01_03680at 754.642 kb on + strandat 754.774 kb on + strandat 754.924 kb on - strandat 754.927 kb on + strandat 754.927 kb on + strandat 754.935 kb on - strandat 754.935 kb on - strandat 755.015 kb on - strandat 755.084 kb on - strand, within CSW01_03685at 755.098 kb on + strand, within CSW01_03685at 755.098 kb on + strand, within CSW01_03685at 755.098 kb on + strand, within CSW01_03685at 755.106 kb on - strand, within CSW01_03685at 755.131 kb on - strand, within CSW01_03685at 755.268 kb on + strand, within CSW01_03685at 755.329 kb on + strandat 755.329 kb on + strandat 755.337 kb on - strandat 755.350 kb on + strandat 755.358 kb on - strandat 755.358 kb on - strandat 755.358 kb on - strandat 755.358 kb on - strandat 755.358 kb on - strandat 755.516 kb on - strandat 755.722 kb on + strandat 755.730 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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752,599 + CSW01_03675 0.23 -2.0
752,607 - CSW01_03675 0.24 -1.9
752,635 + CSW01_03675 0.26 -0.4
752,694 - CSW01_03675 0.32 +0.2
752,694 - CSW01_03675 0.32 -0.3
752,694 - CSW01_03675 0.32 +0.8
752,729 + CSW01_03675 0.35 -3.6
752,763 + CSW01_03675 0.38 +0.7
752,767 - CSW01_03675 0.39 -1.2
752,771 - CSW01_03675 0.39 +0.4
752,782 + CSW01_03675 0.40 -0.2
752,782 + CSW01_03675 0.40 -1.1
752,782 + CSW01_03675 0.40 +0.5
752,782 + CSW01_03675 0.40 -0.5
752,790 - CSW01_03675 0.41 +1.4
752,790 - CSW01_03675 0.41 +0.4
752,805 + CSW01_03675 0.42 -1.2
752,898 - CSW01_03675 0.51 -1.2
752,902 + CSW01_03675 0.51 -3.0
752,904 + CSW01_03675 0.51 +0.1
752,912 - CSW01_03675 0.52 -0.3
752,928 - CSW01_03675 0.54 +0.0
752,929 - CSW01_03675 0.54 -2.7
752,929 - CSW01_03675 0.54 -1.1
752,949 + CSW01_03675 0.55 +0.5
753,067 - CSW01_03675 0.66 -2.2
753,194 - CSW01_03675 0.78 -4.0
753,251 - CSW01_03675 0.83 -2.0
753,361 - -3.2
753,491 - -0.7
753,555 - -0.1
753,602 - -2.1
753,602 - +1.0
753,612 + -0.5
753,649 - -2.8
753,692 - CSW01_03680 0.10 -2.8
753,713 + CSW01_03680 0.12 +1.4
753,774 - CSW01_03680 0.17 -1.4
753,806 - CSW01_03680 0.20 +0.0
753,872 + CSW01_03680 0.26 +0.4
754,002 + CSW01_03680 0.37 -4.1
754,094 + CSW01_03680 0.44 +0.0
754,104 - CSW01_03680 0.45 +0.4
754,116 + CSW01_03680 0.46 -2.9
754,124 - CSW01_03680 0.47 -2.5
754,171 + CSW01_03680 0.51 +1.1
754,171 + CSW01_03680 0.51 +1.3
754,174 + CSW01_03680 0.51 -0.8
754,179 - CSW01_03680 0.52 +0.5
754,183 + CSW01_03680 0.52 -1.9
754,197 + CSW01_03680 0.53 +0.5
754,197 + CSW01_03680 0.53 +0.1
754,197 + CSW01_03680 0.53 -2.9
754,197 + CSW01_03680 0.53 -2.8
754,197 + CSW01_03680 0.53 +0.6
754,197 + CSW01_03680 0.53 -2.5
754,197 + CSW01_03680 0.53 -3.4
754,200 - CSW01_03680 0.53 -1.3
754,202 + CSW01_03680 0.54 -1.7
754,205 - CSW01_03680 0.54 -1.4
754,207 + CSW01_03680 0.54 -1.1
754,207 + CSW01_03680 0.54 -0.9
754,209 + CSW01_03680 0.54 -0.3
754,209 + CSW01_03680 0.54 -0.2
754,210 - CSW01_03680 0.54 +1.4
754,246 + CSW01_03680 0.57 -1.9
754,254 - CSW01_03680 0.58 +0.7
754,259 - CSW01_03680 0.58 +0.4
754,318 + CSW01_03680 0.63 -0.3
754,353 + CSW01_03680 0.66 +1.3
754,387 + CSW01_03680 0.69 -1.4
754,395 - CSW01_03680 0.70 -0.2
754,422 + CSW01_03680 0.72 +0.7
754,430 - CSW01_03680 0.73 +1.0
754,435 + CSW01_03680 0.73 -0.5
754,435 + CSW01_03680 0.73 -2.8
754,443 - CSW01_03680 0.74 +0.8
754,443 - CSW01_03680 0.74 -2.7
754,443 - CSW01_03680 0.74 -0.2
754,443 - CSW01_03680 0.74 -1.7
754,642 + +1.4
754,774 + +1.3
754,924 - -3.8
754,927 + -2.1
754,927 + -0.1
754,935 - -0.7
754,935 - -1.0
755,015 - +0.1
755,084 - CSW01_03685 0.30 -2.1
755,098 + CSW01_03685 0.34 -1.8
755,098 + CSW01_03685 0.34 -0.4
755,098 + CSW01_03685 0.34 -2.6
755,106 - CSW01_03685 0.36 +0.6
755,131 - CSW01_03685 0.44 -1.8
755,268 + CSW01_03685 0.86 +0.8
755,329 + +0.1
755,329 + +0.5
755,337 - -0.6
755,350 + +0.7
755,358 - +0.8
755,358 - -3.1
755,358 - +1.0
755,358 - +0.7
755,358 - +0.3
755,516 - +0.6
755,722 + -0.2
755,730 - -0.7

Or see this region's nucleotide sequence