Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03600

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03595 and CSW01_03600 are separated by 252 nucleotidesCSW01_03600 and CSW01_03605 are separated by 15 nucleotides CSW01_03595: CSW01_03595 - carbon starvation protein A, at 732,542 to 734,026 _03595 CSW01_03600: CSW01_03600 - DUF2799 domain-containing protein, at 734,279 to 734,620 _03600 CSW01_03605: CSW01_03605 - sodium:proton antiporter, at 734,636 to 736,435 _03605 Position (kb) 734 735Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 733.296 kb on + strand, within CSW01_03595at 733.304 kb on - strand, within CSW01_03595at 733.368 kb on - strand, within CSW01_03595at 733.375 kb on + strand, within CSW01_03595at 733.392 kb on - strand, within CSW01_03595at 733.409 kb on + strand, within CSW01_03595at 733.409 kb on + strand, within CSW01_03595at 733.570 kb on + strand, within CSW01_03595at 733.616 kb on - strand, within CSW01_03595at 733.674 kb on - strand, within CSW01_03595at 733.696 kb on - strand, within CSW01_03595at 733.723 kb on + strand, within CSW01_03595at 733.728 kb on + strand, within CSW01_03595at 733.728 kb on + strand, within CSW01_03595at 733.784 kb on - strand, within CSW01_03595at 733.809 kb on + strand, within CSW01_03595at 733.839 kb on - strand, within CSW01_03595at 733.891 kb on - strandat 734.017 kb on - strandat 734.018 kb on - strandat 734.177 kb on - strandat 734.230 kb on - strandat 734.268 kb on - strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.304 kb on + strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.312 kb on - strandat 734.356 kb on - strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.397 kb on + strand, within CSW01_03600at 734.402 kb on + strand, within CSW01_03600at 734.405 kb on + strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.405 kb on - strand, within CSW01_03600at 734.421 kb on + strand, within CSW01_03600at 734.429 kb on - strand, within CSW01_03600at 734.556 kb on + strand, within CSW01_03600at 734.556 kb on + strand, within CSW01_03600at 734.556 kb on + strand, within CSW01_03600at 734.564 kb on - strand, within CSW01_03600at 734.564 kb on - strand, within CSW01_03600at 734.564 kb on - strand, within CSW01_03600at 734.587 kb on - strandat 734.621 kb on + strandat 734.665 kb on - strandat 734.665 kb on - strandat 734.665 kb on - strandat 734.675 kb on - strandat 734.803 kb on - strandat 734.868 kb on + strand, within CSW01_03605at 734.884 kb on + strand, within CSW01_03605at 734.896 kb on + strand, within CSW01_03605at 734.896 kb on + strand, within CSW01_03605at 734.896 kb on + strand, within CSW01_03605at 734.898 kb on + strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.904 kb on - strand, within CSW01_03605at 734.906 kb on - strand, within CSW01_03605at 734.914 kb on - strand, within CSW01_03605at 734.914 kb on - strand, within CSW01_03605at 734.914 kb on - strand, within CSW01_03605at 734.914 kb on - strand, within CSW01_03605at 734.982 kb on - strand, within CSW01_03605at 735.020 kb on - strand, within CSW01_03605at 735.060 kb on + strand, within CSW01_03605at 735.060 kb on + strand, within CSW01_03605at 735.060 kb on + strand, within CSW01_03605at 735.060 kb on - strand, within CSW01_03605at 735.133 kb on + strand, within CSW01_03605at 735.139 kb on - strand, within CSW01_03605at 735.141 kb on - strand, within CSW01_03605at 735.171 kb on + strand, within CSW01_03605at 735.176 kb on + strand, within CSW01_03605at 735.176 kb on + strand, within CSW01_03605at 735.183 kb on + strand, within CSW01_03605at 735.183 kb on + strand, within CSW01_03605at 735.191 kb on - strand, within CSW01_03605at 735.191 kb on - strand, within CSW01_03605at 735.191 kb on - strand, within CSW01_03605at 735.257 kb on + strand, within CSW01_03605at 735.262 kb on + strand, within CSW01_03605at 735.265 kb on - strand, within CSW01_03605at 735.267 kb on - strand, within CSW01_03605at 735.270 kb on - strand, within CSW01_03605at 735.270 kb on - strand, within CSW01_03605at 735.309 kb on + strand, within CSW01_03605at 735.309 kb on + strand, within CSW01_03605at 735.312 kb on - strand, within CSW01_03605at 735.312 kb on - strand, within CSW01_03605at 735.312 kb on - strand, within CSW01_03605at 735.312 kb on - strand, within CSW01_03605at 735.312 kb on - strand, within CSW01_03605at 735.317 kb on - strand, within CSW01_03605at 735.319 kb on - strand, within CSW01_03605at 735.342 kb on - strand, within CSW01_03605at 735.342 kb on - strand, within CSW01_03605at 735.384 kb on + strand, within CSW01_03605at 735.385 kb on - strand, within CSW01_03605at 735.409 kb on + strand, within CSW01_03605at 735.425 kb on + strand, within CSW01_03605at 735.441 kb on - strand, within CSW01_03605at 735.462 kb on + strand, within CSW01_03605at 735.470 kb on - strand, within CSW01_03605at 735.470 kb on - strand, within CSW01_03605at 735.470 kb on - strand, within CSW01_03605at 735.475 kb on - strand, within CSW01_03605at 735.501 kb on - strand, within CSW01_03605at 735.576 kb on - strand, within CSW01_03605at 735.583 kb on + strand, within CSW01_03605at 735.595 kb on + strand, within CSW01_03605at 735.611 kb on - strand, within CSW01_03605

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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733,296 + CSW01_03595 0.51 +0.2
733,304 - CSW01_03595 0.51 +1.2
733,368 - CSW01_03595 0.56 +0.3
733,375 + CSW01_03595 0.56 -1.0
733,392 - CSW01_03595 0.57 -4.1
733,409 + CSW01_03595 0.58 -1.6
733,409 + CSW01_03595 0.58 -3.1
733,570 + CSW01_03595 0.69 +0.2
733,616 - CSW01_03595 0.72 -0.7
733,674 - CSW01_03595 0.76 +0.0
733,696 - CSW01_03595 0.78 +0.0
733,723 + CSW01_03595 0.80 +0.2
733,728 + CSW01_03595 0.80 +0.4
733,728 + CSW01_03595 0.80 -1.6
733,784 - CSW01_03595 0.84 +0.4
733,809 + CSW01_03595 0.85 -0.2
733,839 - CSW01_03595 0.87 +0.4
733,891 - +2.7
734,017 - -2.2
734,018 - -0.1
734,177 - +0.6
734,230 - +0.4
734,268 - -0.5
734,304 + -0.6
734,304 + +1.6
734,304 + +0.2
734,304 + +0.4
734,304 + -3.2
734,304 + +0.8
734,312 - -0.5
734,312 - +0.7
734,312 - +2.0
734,312 - -2.4
734,312 - +0.1
734,312 - -1.6
734,356 - CSW01_03600 0.23 +0.5
734,397 + CSW01_03600 0.35 +1.9
734,397 + CSW01_03600 0.35 -0.9
734,397 + CSW01_03600 0.35 -0.4
734,397 + CSW01_03600 0.35 +0.3
734,397 + CSW01_03600 0.35 -0.1
734,397 + CSW01_03600 0.35 +1.0
734,397 + CSW01_03600 0.35 -3.2
734,397 + CSW01_03600 0.35 -3.6
734,402 + CSW01_03600 0.36 -0.6
734,405 + CSW01_03600 0.37 +0.0
734,405 - CSW01_03600 0.37 +0.8
734,405 - CSW01_03600 0.37 -3.7
734,405 - CSW01_03600 0.37 -1.1
734,405 - CSW01_03600 0.37 -3.8
734,405 - CSW01_03600 0.37 -1.0
734,405 - CSW01_03600 0.37 +1.3
734,405 - CSW01_03600 0.37 +0.1
734,405 - CSW01_03600 0.37 +0.8
734,405 - CSW01_03600 0.37 -0.9
734,405 - CSW01_03600 0.37 -1.8
734,405 - CSW01_03600 0.37 -0.5
734,421 + CSW01_03600 0.42 +1.2
734,429 - CSW01_03600 0.44 -0.1
734,556 + CSW01_03600 0.81 -1.9
734,556 + CSW01_03600 0.81 +1.5
734,556 + CSW01_03600 0.81 -2.1
734,564 - CSW01_03600 0.83 -1.5
734,564 - CSW01_03600 0.83 +0.1
734,564 - CSW01_03600 0.83 -0.0
734,587 - -1.2
734,621 + -0.8
734,665 - -0.3
734,665 - +1.3
734,665 - -2.1
734,675 - -2.4
734,803 - +0.2
734,868 + CSW01_03605 0.13 +1.3
734,884 + CSW01_03605 0.14 +0.6
734,896 + CSW01_03605 0.14 -3.8
734,896 + CSW01_03605 0.14 -1.6
734,896 + CSW01_03605 0.14 +0.6
734,898 + CSW01_03605 0.15 +0.8
734,904 - CSW01_03605 0.15 -0.3
734,904 - CSW01_03605 0.15 -0.5
734,904 - CSW01_03605 0.15 +1.0
734,904 - CSW01_03605 0.15 -2.4
734,904 - CSW01_03605 0.15 -0.5
734,906 - CSW01_03605 0.15 +1.6
734,914 - CSW01_03605 0.15 -2.0
734,914 - CSW01_03605 0.15 +0.2
734,914 - CSW01_03605 0.15 +2.1
734,914 - CSW01_03605 0.15 -3.2
734,982 - CSW01_03605 0.19 -0.7
735,020 - CSW01_03605 0.21 +0.8
735,060 + CSW01_03605 0.24 +1.2
735,060 + CSW01_03605 0.24 -0.3
735,060 + CSW01_03605 0.24 +0.2
735,060 - CSW01_03605 0.24 -1.5
735,133 + CSW01_03605 0.28 +0.3
735,139 - CSW01_03605 0.28 +1.0
735,141 - CSW01_03605 0.28 +0.6
735,171 + CSW01_03605 0.30 +1.0
735,176 + CSW01_03605 0.30 +1.1
735,176 + CSW01_03605 0.30 -0.4
735,183 + CSW01_03605 0.30 +0.4
735,183 + CSW01_03605 0.30 +1.2
735,191 - CSW01_03605 0.31 -3.0
735,191 - CSW01_03605 0.31 -0.2
735,191 - CSW01_03605 0.31 +2.4
735,257 + CSW01_03605 0.34 +0.8
735,262 + CSW01_03605 0.35 +1.4
735,265 - CSW01_03605 0.35 +1.7
735,267 - CSW01_03605 0.35 +0.3
735,270 - CSW01_03605 0.35 +1.4
735,270 - CSW01_03605 0.35 +1.3
735,309 + CSW01_03605 0.37 +0.5
735,309 + CSW01_03605 0.37 +0.9
735,312 - CSW01_03605 0.38 +1.0
735,312 - CSW01_03605 0.38 -0.2
735,312 - CSW01_03605 0.38 -2.3
735,312 - CSW01_03605 0.38 +1.8
735,312 - CSW01_03605 0.38 -0.3
735,317 - CSW01_03605 0.38 -0.9
735,319 - CSW01_03605 0.38 -2.4
735,342 - CSW01_03605 0.39 -1.3
735,342 - CSW01_03605 0.39 -0.9
735,384 + CSW01_03605 0.42 +0.0
735,385 - CSW01_03605 0.42 +0.1
735,409 + CSW01_03605 0.43 +0.7
735,425 + CSW01_03605 0.44 -1.9
735,441 - CSW01_03605 0.45 +0.9
735,462 + CSW01_03605 0.46 -3.2
735,470 - CSW01_03605 0.46 -1.5
735,470 - CSW01_03605 0.46 +0.9
735,470 - CSW01_03605 0.46 +1.1
735,475 - CSW01_03605 0.47 -0.1
735,501 - CSW01_03605 0.48 -2.4
735,576 - CSW01_03605 0.52 -0.2
735,583 + CSW01_03605 0.53 +3.1
735,595 + CSW01_03605 0.53 +0.8
735,611 - CSW01_03605 0.54 +0.3

Or see this region's nucleotide sequence