Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03545

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03535 and CSW01_03540 are separated by 9 nucleotidesCSW01_03540 and CSW01_03545 are separated by 92 nucleotidesCSW01_03545 and CSW01_03550 are separated by 394 nucleotides CSW01_03535: CSW01_03535 - prolipoprotein diacylglyceryl transferase, at 719,487 to 720,302 _03535 CSW01_03540: CSW01_03540 - thymidylate synthase, at 720,312 to 721,163 _03540 CSW01_03545: CSW01_03545 - Na/Pi cotransporter family protein, at 721,256 to 722,404 _03545 CSW01_03550: CSW01_03550 - transcriptional activator protein NhaR, at 722,799 to 723,689 _03550 Position (kb) 721 722 723Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 721.191 kb on - strandat 721.357 kb on + strandat 721.365 kb on - strandat 721.365 kb on - strandat 721.392 kb on + strand, within CSW01_03545at 721.496 kb on + strand, within CSW01_03545at 721.504 kb on - strand, within CSW01_03545at 721.567 kb on + strand, within CSW01_03545at 721.575 kb on - strand, within CSW01_03545at 721.588 kb on + strand, within CSW01_03545at 721.588 kb on + strand, within CSW01_03545at 721.596 kb on - strand, within CSW01_03545at 721.596 kb on - strand, within CSW01_03545at 721.598 kb on + strand, within CSW01_03545at 721.621 kb on - strand, within CSW01_03545at 721.634 kb on - strand, within CSW01_03545at 721.648 kb on - strand, within CSW01_03545at 721.724 kb on - strand, within CSW01_03545at 721.797 kb on + strand, within CSW01_03545at 721.797 kb on + strand, within CSW01_03545at 721.805 kb on - strand, within CSW01_03545at 721.805 kb on - strand, within CSW01_03545at 721.864 kb on + strand, within CSW01_03545at 721.872 kb on - strand, within CSW01_03545at 721.919 kb on + strand, within CSW01_03545at 721.919 kb on + strand, within CSW01_03545at 721.967 kb on + strand, within CSW01_03545at 721.975 kb on - strand, within CSW01_03545at 722.012 kb on + strand, within CSW01_03545at 722.020 kb on - strand, within CSW01_03545at 722.032 kb on + strand, within CSW01_03545at 722.032 kb on + strand, within CSW01_03545at 722.055 kb on + strand, within CSW01_03545at 722.072 kb on + strand, within CSW01_03545at 722.097 kb on + strand, within CSW01_03545at 722.097 kb on + strand, within CSW01_03545at 722.132 kb on + strand, within CSW01_03545at 722.345 kb on + strandat 722.345 kb on + strandat 722.353 kb on - strandat 722.353 kb on - strandat 722.421 kb on - strandat 722.430 kb on - strandat 722.432 kb on - strandat 722.663 kb on + strandat 722.671 kb on - strandat 722.759 kb on + strandat 722.822 kb on + strandat 722.882 kb on + strandat 722.912 kb on + strand, within CSW01_03550at 722.912 kb on + strand, within CSW01_03550at 722.920 kb on - strand, within CSW01_03550at 722.920 kb on - strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.968 kb on + strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.976 kb on - strand, within CSW01_03550at 722.982 kb on + strand, within CSW01_03550at 723.012 kb on + strand, within CSW01_03550at 723.020 kb on - strand, within CSW01_03550at 723.103 kb on - strand, within CSW01_03550at 723.139 kb on + strand, within CSW01_03550at 723.139 kb on + strand, within CSW01_03550at 723.139 kb on + strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.147 kb on - strand, within CSW01_03550at 723.165 kb on + strand, within CSW01_03550at 723.175 kb on + strand, within CSW01_03550at 723.175 kb on + strand, within CSW01_03550at 723.175 kb on + strand, within CSW01_03550at 723.175 kb on + strand, within CSW01_03550at 723.183 kb on - strand, within CSW01_03550at 723.183 kb on - strand, within CSW01_03550at 723.183 kb on - strand, within CSW01_03550at 723.194 kb on - strand, within CSW01_03550at 723.207 kb on + strand, within CSW01_03550at 723.208 kb on + strand, within CSW01_03550at 723.354 kb on + strand, within CSW01_03550at 723.354 kb on + strand, within CSW01_03550at 723.362 kb on - strand, within CSW01_03550at 723.362 kb on - strand, within CSW01_03550at 723.378 kb on + strand, within CSW01_03550at 723.378 kb on + strand, within CSW01_03550

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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721,191 - -3.6
721,357 + +0.6
721,365 - -0.4
721,365 - -0.1
721,392 + CSW01_03545 0.12 -1.1
721,496 + CSW01_03545 0.21 +0.3
721,504 - CSW01_03545 0.22 -2.5
721,567 + CSW01_03545 0.27 +1.4
721,575 - CSW01_03545 0.28 +1.7
721,588 + CSW01_03545 0.29 +1.7
721,588 + CSW01_03545 0.29 +0.6
721,596 - CSW01_03545 0.30 +0.5
721,596 - CSW01_03545 0.30 -1.9
721,598 + CSW01_03545 0.30 -1.3
721,621 - CSW01_03545 0.32 -3.0
721,634 - CSW01_03545 0.33 -1.1
721,648 - CSW01_03545 0.34 -2.1
721,724 - CSW01_03545 0.41 -0.3
721,797 + CSW01_03545 0.47 +0.8
721,797 + CSW01_03545 0.47 -2.1
721,805 - CSW01_03545 0.48 -0.5
721,805 - CSW01_03545 0.48 +1.0
721,864 + CSW01_03545 0.53 -0.2
721,872 - CSW01_03545 0.54 -0.2
721,919 + CSW01_03545 0.58 -0.5
721,919 + CSW01_03545 0.58 -0.8
721,967 + CSW01_03545 0.62 -0.1
721,975 - CSW01_03545 0.63 -0.4
722,012 + CSW01_03545 0.66 -2.6
722,020 - CSW01_03545 0.66 -1.2
722,032 + CSW01_03545 0.68 -0.4
722,032 + CSW01_03545 0.68 -0.8
722,055 + CSW01_03545 0.70 -3.0
722,072 + CSW01_03545 0.71 +1.3
722,097 + CSW01_03545 0.73 +0.5
722,097 + CSW01_03545 0.73 +0.1
722,132 + CSW01_03545 0.76 -0.7
722,345 + -0.1
722,345 + -0.2
722,353 - -3.6
722,353 - +0.3
722,421 - -2.5
722,430 - +0.4
722,432 - +1.2
722,663 + +0.3
722,671 - +0.6
722,759 + +1.8
722,822 + +0.4
722,882 + -0.2
722,912 + CSW01_03550 0.13 -2.9
722,912 + CSW01_03550 0.13 -2.0
722,920 - CSW01_03550 0.14 +1.1
722,920 - CSW01_03550 0.14 -0.4
722,968 + CSW01_03550 0.19 -1.8
722,968 + CSW01_03550 0.19 -1.2
722,968 + CSW01_03550 0.19 +1.3
722,968 + CSW01_03550 0.19 -0.5
722,968 + CSW01_03550 0.19 +0.5
722,968 + CSW01_03550 0.19 +2.6
722,968 + CSW01_03550 0.19 +0.7
722,968 + CSW01_03550 0.19 -0.1
722,976 - CSW01_03550 0.20 -0.4
722,976 - CSW01_03550 0.20 -0.7
722,976 - CSW01_03550 0.20 -2.6
722,976 - CSW01_03550 0.20 +0.5
722,976 - CSW01_03550 0.20 +1.1
722,976 - CSW01_03550 0.20 +0.6
722,976 - CSW01_03550 0.20 -0.1
722,976 - CSW01_03550 0.20 +1.5
722,976 - CSW01_03550 0.20 +0.3
722,976 - CSW01_03550 0.20 +0.3
722,976 - CSW01_03550 0.20 +1.2
722,976 - CSW01_03550 0.20 +1.7
722,976 - CSW01_03550 0.20 +1.3
722,982 + CSW01_03550 0.21 -1.0
723,012 + CSW01_03550 0.24 -2.2
723,020 - CSW01_03550 0.25 +0.5
723,103 - CSW01_03550 0.34 +0.7
723,139 + CSW01_03550 0.38 +1.7
723,139 + CSW01_03550 0.38 +0.7
723,139 + CSW01_03550 0.38 -0.2
723,147 - CSW01_03550 0.39 +0.5
723,147 - CSW01_03550 0.39 -2.8
723,147 - CSW01_03550 0.39 +1.2
723,147 - CSW01_03550 0.39 +0.4
723,147 - CSW01_03550 0.39 +0.1
723,147 - CSW01_03550 0.39 +0.4
723,165 + CSW01_03550 0.41 +1.0
723,175 + CSW01_03550 0.42 +2.5
723,175 + CSW01_03550 0.42 -0.8
723,175 + CSW01_03550 0.42 -0.2
723,175 + CSW01_03550 0.42 -1.1
723,183 - CSW01_03550 0.43 +3.3
723,183 - CSW01_03550 0.43 -0.0
723,183 - CSW01_03550 0.43 -0.4
723,194 - CSW01_03550 0.44 -1.0
723,207 + CSW01_03550 0.46 +2.0
723,208 + CSW01_03550 0.46 +2.2
723,354 + CSW01_03550 0.62 +1.2
723,354 + CSW01_03550 0.62 -1.4
723,362 - CSW01_03550 0.63 +0.3
723,362 - CSW01_03550 0.63 +1.9
723,378 + CSW01_03550 0.65 +0.5
723,378 + CSW01_03550 0.65 -1.7

Or see this region's nucleotide sequence