Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03270

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03265 and CSW01_03270 are separated by 572 nucleotidesCSW01_03270 and CSW01_03275 overlap by 52 nucleotides CSW01_03265: CSW01_03265 - peptide ABC transporter substrate-binding protein, at 654,397 to 656,067 _03265 CSW01_03270: CSW01_03270 - hypothetical protein, at 656,640 to 657,029 _03270 CSW01_03275: CSW01_03275 - hybrid sensor histidine kinase/response regulator, at 656,978 to 660,367 _03275 Position (kb) 656 657 658Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 655.739 kb on + strand, within CSW01_03265at 655.742 kb on + strand, within CSW01_03265at 655.742 kb on + strand, within CSW01_03265at 655.764 kb on + strand, within CSW01_03265at 655.765 kb on + strand, within CSW01_03265at 655.772 kb on + strand, within CSW01_03265at 655.772 kb on - strand, within CSW01_03265at 655.773 kb on - strand, within CSW01_03265at 655.773 kb on - strand, within CSW01_03265at 655.952 kb on + strandat 656.001 kb on - strandat 656.043 kb on - strandat 656.055 kb on - strandat 656.132 kb on + strandat 656.140 kb on - strandat 656.160 kb on - strandat 656.160 kb on - strandat 656.162 kb on + strandat 656.162 kb on + strandat 656.170 kb on - strandat 656.195 kb on + strandat 656.642 kb on + strandat 656.648 kb on + strandat 656.656 kb on - strandat 656.656 kb on - strandat 656.656 kb on - strandat 656.685 kb on + strand, within CSW01_03270at 656.693 kb on - strand, within CSW01_03270at 656.733 kb on - strand, within CSW01_03270at 656.742 kb on + strand, within CSW01_03270at 656.890 kb on - strand, within CSW01_03270at 656.890 kb on - strand, within CSW01_03270at 656.902 kb on - strand, within CSW01_03270at 656.902 kb on - strand, within CSW01_03270at 656.980 kb on + strandat 656.987 kb on + strandat 657.066 kb on - strandat 657.075 kb on + strandat 657.080 kb on + strandat 657.088 kb on - strandat 657.103 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.142 kb on + strandat 657.142 kb on + strandat 657.150 kb on - strandat 657.190 kb on - strandat 657.228 kb on - strandat 657.232 kb on + strandat 657.242 kb on + strandat 657.249 kb on + strandat 657.254 kb on + strandat 657.254 kb on + strandat 657.254 kb on + strandat 657.261 kb on + strandat 657.262 kb on - strandat 657.322 kb on - strand, within CSW01_03275at 657.389 kb on + strand, within CSW01_03275at 657.393 kb on + strand, within CSW01_03275at 657.404 kb on + strand, within CSW01_03275at 657.425 kb on - strand, within CSW01_03275at 657.441 kb on + strand, within CSW01_03275at 657.449 kb on - strand, within CSW01_03275at 657.449 kb on - strand, within CSW01_03275at 657.449 kb on - strand, within CSW01_03275at 657.484 kb on + strand, within CSW01_03275at 657.484 kb on + strand, within CSW01_03275at 657.492 kb on - strand, within CSW01_03275at 657.519 kb on - strand, within CSW01_03275at 657.564 kb on + strand, within CSW01_03275at 657.566 kb on + strand, within CSW01_03275at 657.574 kb on - strand, within CSW01_03275at 657.602 kb on + strand, within CSW01_03275at 657.632 kb on - strand, within CSW01_03275at 657.632 kb on - strand, within CSW01_03275at 657.634 kb on + strand, within CSW01_03275at 657.634 kb on + strand, within CSW01_03275at 657.634 kb on + strand, within CSW01_03275at 657.634 kb on + strand, within CSW01_03275at 657.634 kb on + strand, within CSW01_03275at 657.634 kb on + strand, within CSW01_03275at 657.634 kb on + strand, within CSW01_03275at 657.639 kb on + strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.647 kb on - strand, within CSW01_03275at 657.650 kb on + strand, within CSW01_03275at 657.695 kb on - strand, within CSW01_03275at 657.832 kb on + strand, within CSW01_03275at 657.832 kb on + strand, within CSW01_03275at 657.846 kb on + strand, within CSW01_03275at 657.871 kb on + strand, within CSW01_03275at 657.881 kb on - strand, within CSW01_03275at 657.895 kb on + strand, within CSW01_03275at 657.900 kb on + strand, within CSW01_03275at 657.929 kb on - strand, within CSW01_03275at 657.961 kb on - strand, within CSW01_03275at 657.972 kb on + strand, within CSW01_03275at 657.980 kb on - strand, within CSW01_03275at 657.982 kb on + strand, within CSW01_03275at 657.982 kb on + strand, within CSW01_03275at 657.991 kb on + strand, within CSW01_03275at 657.999 kb on - strand, within CSW01_03275at 658.021 kb on + strand, within CSW01_03275at 658.021 kb on + strand, within CSW01_03275at 658.021 kb on + strand, within CSW01_03275at 658.029 kb on - strand, within CSW01_03275at 658.029 kb on - strand, within CSW01_03275

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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655,739 + CSW01_03265 0.80 +0.9
655,742 + CSW01_03265 0.80 +0.6
655,742 + CSW01_03265 0.80 -2.6
655,764 + CSW01_03265 0.82 +0.7
655,765 + CSW01_03265 0.82 +2.0
655,772 + CSW01_03265 0.82 +0.1
655,772 - CSW01_03265 0.82 -0.3
655,773 - CSW01_03265 0.82 -1.4
655,773 - CSW01_03265 0.82 +0.3
655,952 + +0.3
656,001 - +1.5
656,043 - -2.5
656,055 - -1.9
656,132 + +0.9
656,140 - -2.4
656,160 - +0.9
656,160 - -1.0
656,162 + +1.1
656,162 + -0.2
656,170 - -3.4
656,195 + +1.5
656,642 + -0.8
656,648 + -4.3
656,656 - -1.0
656,656 - +0.6
656,656 - -3.1
656,685 + CSW01_03270 0.12 +0.3
656,693 - CSW01_03270 0.14 +2.7
656,733 - CSW01_03270 0.24 +0.2
656,742 + CSW01_03270 0.26 +1.0
656,890 - CSW01_03270 0.64 +1.7
656,890 - CSW01_03270 0.64 -4.3
656,902 - CSW01_03270 0.67 -0.5
656,902 - CSW01_03270 0.67 +0.0
656,980 + -0.6
656,987 + +1.4
657,066 - -1.1
657,075 + +0.8
657,080 + +0.6
657,088 - -2.6
657,103 + -0.8
657,105 + +1.0
657,105 + -0.1
657,105 + +0.0
657,105 + +1.4
657,105 + +1.4
657,105 + +0.4
657,105 + +0.8
657,105 + -3.2
657,105 + -0.7
657,113 - +1.5
657,113 - +0.3
657,113 - -1.1
657,113 - -1.6
657,113 - +0.5
657,113 - +0.3
657,113 - -3.2
657,113 - -2.1
657,113 - -0.9
657,113 - -2.5
657,113 - +0.9
657,113 - +0.8
657,113 - +1.3
657,142 + -2.5
657,142 + +1.4
657,150 - +0.8
657,190 - -0.6
657,228 - -0.1
657,232 + +1.6
657,242 + -0.5
657,249 + +1.3
657,254 + -0.8
657,254 + -4.5
657,254 + +1.3
657,261 + +1.1
657,262 - -1.2
657,322 - CSW01_03275 0.10 -4.1
657,389 + CSW01_03275 0.12 -1.7
657,393 + CSW01_03275 0.12 -0.0
657,404 + CSW01_03275 0.13 +0.9
657,425 - CSW01_03275 0.13 +0.1
657,441 + CSW01_03275 0.14 -3.3
657,449 - CSW01_03275 0.14 -1.6
657,449 - CSW01_03275 0.14 +1.6
657,449 - CSW01_03275 0.14 -1.0
657,484 + CSW01_03275 0.15 +0.3
657,484 + CSW01_03275 0.15 +0.5
657,492 - CSW01_03275 0.15 +1.3
657,519 - CSW01_03275 0.16 -3.1
657,564 + CSW01_03275 0.17 -3.1
657,566 + CSW01_03275 0.17 -0.8
657,574 - CSW01_03275 0.18 -1.8
657,602 + CSW01_03275 0.18 -1.1
657,632 - CSW01_03275 0.19 -1.0
657,632 - CSW01_03275 0.19 -2.7
657,634 + CSW01_03275 0.19 +2.0
657,634 + CSW01_03275 0.19 +1.8
657,634 + CSW01_03275 0.19 +0.4
657,634 + CSW01_03275 0.19 +1.7
657,634 + CSW01_03275 0.19 +1.2
657,634 + CSW01_03275 0.19 -2.5
657,634 + CSW01_03275 0.19 -0.7
657,639 + CSW01_03275 0.19 -0.4
657,642 - CSW01_03275 0.20 +1.5
657,642 - CSW01_03275 0.20 +1.1
657,642 - CSW01_03275 0.20 -2.9
657,642 - CSW01_03275 0.20 +0.2
657,642 - CSW01_03275 0.20 -0.8
657,642 - CSW01_03275 0.20 -2.4
657,642 - CSW01_03275 0.20 -0.4
657,642 - CSW01_03275 0.20 +1.3
657,642 - CSW01_03275 0.20 +1.0
657,642 - CSW01_03275 0.20 -1.4
657,642 - CSW01_03275 0.20 -0.4
657,642 - CSW01_03275 0.20 +1.2
657,642 - CSW01_03275 0.20 +0.3
657,642 - CSW01_03275 0.20 -1.8
657,642 - CSW01_03275 0.20 -2.2
657,642 - CSW01_03275 0.20 -0.3
657,642 - CSW01_03275 0.20 -0.6
657,642 - CSW01_03275 0.20 +1.2
657,647 - CSW01_03275 0.20 -1.4
657,650 + CSW01_03275 0.20 +1.0
657,695 - CSW01_03275 0.21 -2.2
657,832 + CSW01_03275 0.25 -1.5
657,832 + CSW01_03275 0.25 -3.0
657,846 + CSW01_03275 0.26 +0.3
657,871 + CSW01_03275 0.26 -1.4
657,881 - CSW01_03275 0.27 +1.1
657,895 + CSW01_03275 0.27 -0.7
657,900 + CSW01_03275 0.27 -0.5
657,929 - CSW01_03275 0.28 -1.0
657,961 - CSW01_03275 0.29 -0.2
657,972 + CSW01_03275 0.29 -2.1
657,980 - CSW01_03275 0.30 -0.4
657,982 + CSW01_03275 0.30 +0.6
657,982 + CSW01_03275 0.30 +0.8
657,991 + CSW01_03275 0.30 +2.0
657,999 - CSW01_03275 0.30 +0.4
658,021 + CSW01_03275 0.31 -0.4
658,021 + CSW01_03275 0.31 -2.8
658,021 + CSW01_03275 0.31 +0.8
658,029 - CSW01_03275 0.31 -0.5
658,029 - CSW01_03275 0.31 +1.1

Or see this region's nucleotide sequence