Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03030 and CSW01_03035 are separated by 223 nucleotides CSW01_03035 and CSW01_03040 are separated by 15 nucleotides CSW01_03040 and CSW01_03045 are separated by 327 nucleotides
CSW01_03030: CSW01_03030 - cell division protein ZapE, at 600,469 to 601,572
_03030
CSW01_03035: CSW01_03035 - 50S ribosomal protein L13, at 601,796 to 602,224
_03035
CSW01_03040: CSW01_03040 - 30S ribosomal protein S9, at 602,240 to 602,632
_03040
CSW01_03045: CSW01_03045 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 602,960 to 603,553
_03045
Position (kb) 601
602
603 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 600.912 kb on + strand, within CSW01_03030 at 600.912 kb on + strand, within CSW01_03030 at 600.920 kb on - strand, within CSW01_03030 at 600.924 kb on + strand, within CSW01_03030 at 600.949 kb on + strand, within CSW01_03030 at 600.955 kb on - strand, within CSW01_03030 at 601.000 kb on + strand, within CSW01_03030 at 601.000 kb on + strand, within CSW01_03030 at 601.000 kb on + strand, within CSW01_03030 at 601.008 kb on - strand, within CSW01_03030 at 601.008 kb on - strand, within CSW01_03030 at 601.008 kb on - strand, within CSW01_03030 at 601.081 kb on - strand, within CSW01_03030 at 601.097 kb on + strand, within CSW01_03030 at 601.126 kb on + strand, within CSW01_03030 at 601.126 kb on + strand, within CSW01_03030 at 601.152 kb on + strand, within CSW01_03030 at 601.158 kb on + strand, within CSW01_03030 at 601.158 kb on + strand, within CSW01_03030 at 601.163 kb on + strand, within CSW01_03030 at 601.166 kb on - strand, within CSW01_03030 at 601.181 kb on + strand, within CSW01_03030 at 601.181 kb on + strand, within CSW01_03030 at 601.181 kb on + strand, within CSW01_03030 at 601.181 kb on + strand, within CSW01_03030 at 601.181 kb on + strand, within CSW01_03030 at 601.181 kb on + strand, within CSW01_03030 at 601.181 kb on + strand, within CSW01_03030 at 601.181 kb on + strand, within CSW01_03030 at 601.181 kb on + strand, within CSW01_03030 at 601.181 kb on + strand, within CSW01_03030 at 601.184 kb on - strand, within CSW01_03030 at 601.186 kb on + strand, within CSW01_03030 at 601.186 kb on + strand, within CSW01_03030 at 601.189 kb on - strand, within CSW01_03030 at 601.189 kb on - strand, within CSW01_03030 at 601.189 kb on - strand, within CSW01_03030 at 601.189 kb on - strand, within CSW01_03030 at 601.189 kb on - strand, within CSW01_03030 at 601.189 kb on - strand, within CSW01_03030 at 601.189 kb on - strand, within CSW01_03030 at 601.189 kb on - strand, within CSW01_03030 at 601.310 kb on + strand, within CSW01_03030 at 601.453 kb on + strand, within CSW01_03030 at 601.589 kb on + strand at 601.597 kb on - strand at 602.748 kb on + strand at 602.938 kb on + strand at 603.140 kb on - strand, within CSW01_03045
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 600,912 + CSW01_03030 0.40 -0.2 600,912 + CSW01_03030 0.40 -2.2 600,920 - CSW01_03030 0.41 +0.3 600,924 + CSW01_03030 0.41 -0.7 600,949 + CSW01_03030 0.43 -0.4 600,955 - CSW01_03030 0.44 -1.7 601,000 + CSW01_03030 0.48 -4.0 601,000 + CSW01_03030 0.48 -1.4 601,000 + CSW01_03030 0.48 -0.8 601,008 - CSW01_03030 0.49 -0.3 601,008 - CSW01_03030 0.49 -1.5 601,008 - CSW01_03030 0.49 -3.2 601,081 - CSW01_03030 0.55 +1.2 601,097 + CSW01_03030 0.57 -3.4 601,126 + CSW01_03030 0.60 +0.2 601,126 + CSW01_03030 0.60 -1.4 601,152 + CSW01_03030 0.62 -1.8 601,158 + CSW01_03030 0.62 -2.2 601,158 + CSW01_03030 0.62 +0.2 601,163 + CSW01_03030 0.63 -1.8 601,166 - CSW01_03030 0.63 -1.5 601,181 + CSW01_03030 0.64 -2.9 601,181 + CSW01_03030 0.64 -1.2 601,181 + CSW01_03030 0.64 +0.5 601,181 + CSW01_03030 0.64 -4.3 601,181 + CSW01_03030 0.64 -3.1 601,181 + CSW01_03030 0.64 -2.4 601,181 + CSW01_03030 0.64 -0.3 601,181 + CSW01_03030 0.64 -1.7 601,181 + CSW01_03030 0.64 -1.5 601,181 + CSW01_03030 0.64 +0.8 601,184 - CSW01_03030 0.65 -4.2 601,186 + CSW01_03030 0.65 -2.3 601,186 + CSW01_03030 0.65 -1.0 601,189 - CSW01_03030 0.65 -1.2 601,189 - CSW01_03030 0.65 -3.4 601,189 - CSW01_03030 0.65 -3.2 601,189 - CSW01_03030 0.65 -3.5 601,189 - CSW01_03030 0.65 -1.4 601,189 - CSW01_03030 0.65 -1.1 601,189 - CSW01_03030 0.65 -1.2 601,189 - CSW01_03030 0.65 +0.3 601,310 + CSW01_03030 0.76 +0.3 601,453 + CSW01_03030 0.89 +0.3 601,589 + -0.7 601,597 - +1.7 602,748 + -0.8 602,938 + -0.8 603,140 - CSW01_03045 0.30 -2.1
Or see this region's nucleotide sequence