Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03025

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03020 and CSW01_03025 are separated by 128 nucleotidesCSW01_03025 and CSW01_03030 are separated by 153 nucleotides CSW01_03020: CSW01_03020 - serine endoprotease DegQ, at 598,379 to 599,749 _03020 CSW01_03025: CSW01_03025 - hypothetical protein, at 599,878 to 600,315 _03025 CSW01_03030: CSW01_03030 - cell division protein ZapE, at 600,469 to 601,572 _03030 Position (kb) 599 600 601Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 599.012 kb on + strand, within CSW01_03020at 599.030 kb on - strand, within CSW01_03020at 599.079 kb on + strand, within CSW01_03020at 599.087 kb on - strand, within CSW01_03020at 599.087 kb on - strand, within CSW01_03020at 599.087 kb on - strand, within CSW01_03020at 599.135 kb on - strand, within CSW01_03020at 599.135 kb on - strand, within CSW01_03020at 599.162 kb on + strand, within CSW01_03020at 599.162 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.177 kb on + strand, within CSW01_03020at 599.240 kb on - strand, within CSW01_03020at 599.271 kb on - strand, within CSW01_03020at 599.271 kb on - strand, within CSW01_03020at 599.378 kb on + strand, within CSW01_03020at 599.409 kb on + strand, within CSW01_03020at 599.441 kb on + strand, within CSW01_03020at 599.443 kb on - strand, within CSW01_03020at 599.443 kb on - strand, within CSW01_03020at 599.454 kb on + strand, within CSW01_03020at 599.472 kb on - strand, within CSW01_03020at 599.583 kb on + strand, within CSW01_03020at 599.583 kb on + strand, within CSW01_03020at 599.586 kb on + strand, within CSW01_03020at 599.641 kb on + strandat 599.719 kb on - strandat 599.884 kb on + strandat 599.951 kb on - strand, within CSW01_03025at 600.035 kb on + strand, within CSW01_03025at 600.107 kb on - strand, within CSW01_03025at 600.162 kb on + strand, within CSW01_03025at 600.177 kb on + strand, within CSW01_03025at 600.180 kb on - strand, within CSW01_03025at 600.185 kb on - strand, within CSW01_03025at 600.242 kb on - strand, within CSW01_03025at 600.310 kb on + strandat 600.310 kb on + strandat 600.529 kb on + strandat 600.666 kb on - strand, within CSW01_03030at 600.673 kb on - strand, within CSW01_03030at 600.675 kb on - strand, within CSW01_03030at 600.691 kb on - strand, within CSW01_03030at 600.701 kb on - strand, within CSW01_03030at 600.912 kb on + strand, within CSW01_03030at 600.912 kb on + strand, within CSW01_03030at 600.920 kb on - strand, within CSW01_03030at 600.924 kb on + strand, within CSW01_03030at 600.949 kb on + strand, within CSW01_03030at 600.955 kb on - strand, within CSW01_03030at 601.000 kb on + strand, within CSW01_03030at 601.000 kb on + strand, within CSW01_03030at 601.000 kb on + strand, within CSW01_03030at 601.008 kb on - strand, within CSW01_03030at 601.008 kb on - strand, within CSW01_03030at 601.008 kb on - strand, within CSW01_03030at 601.081 kb on - strand, within CSW01_03030at 601.097 kb on + strand, within CSW01_03030at 601.126 kb on + strand, within CSW01_03030at 601.126 kb on + strand, within CSW01_03030at 601.152 kb on + strand, within CSW01_03030at 601.158 kb on + strand, within CSW01_03030at 601.158 kb on + strand, within CSW01_03030at 601.163 kb on + strand, within CSW01_03030at 601.166 kb on - strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.181 kb on + strand, within CSW01_03030at 601.184 kb on - strand, within CSW01_03030at 601.186 kb on + strand, within CSW01_03030at 601.186 kb on + strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.189 kb on - strand, within CSW01_03030at 601.310 kb on + strand, within CSW01_03030

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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599,012 + CSW01_03020 0.46 -1.1
599,030 - CSW01_03020 0.47 -3.2
599,079 + CSW01_03020 0.51 +0.4
599,087 - CSW01_03020 0.52 -2.2
599,087 - CSW01_03020 0.52 +0.6
599,087 - CSW01_03020 0.52 -1.4
599,135 - CSW01_03020 0.55 -0.0
599,135 - CSW01_03020 0.55 -1.1
599,162 + CSW01_03020 0.57 -2.3
599,162 + CSW01_03020 0.57 +0.3
599,177 + CSW01_03020 0.58 -0.5
599,177 + CSW01_03020 0.58 +1.0
599,177 + CSW01_03020 0.58 -0.0
599,177 + CSW01_03020 0.58 +0.1
599,177 + CSW01_03020 0.58 -1.2
599,177 + CSW01_03020 0.58 -0.2
599,240 - CSW01_03020 0.63 +1.4
599,271 - CSW01_03020 0.65 -3.0
599,271 - CSW01_03020 0.65 +1.0
599,378 + CSW01_03020 0.73 -2.8
599,409 + CSW01_03020 0.75 +0.0
599,441 + CSW01_03020 0.77 -0.1
599,443 - CSW01_03020 0.78 +0.2
599,443 - CSW01_03020 0.78 +2.2
599,454 + CSW01_03020 0.78 -1.0
599,472 - CSW01_03020 0.80 -1.5
599,583 + CSW01_03020 0.88 +0.2
599,583 + CSW01_03020 0.88 -1.0
599,586 + CSW01_03020 0.88 -0.2
599,641 + -0.4
599,719 - -0.6
599,884 + -0.6
599,951 - CSW01_03025 0.17 +0.1
600,035 + CSW01_03025 0.36 -1.2
600,107 - CSW01_03025 0.52 -3.3
600,162 + CSW01_03025 0.65 +0.6
600,177 + CSW01_03025 0.68 +0.4
600,180 - CSW01_03025 0.69 -0.8
600,185 - CSW01_03025 0.70 +0.6
600,242 - CSW01_03025 0.83 -1.5
600,310 + +1.1
600,310 + +1.4
600,529 + +0.1
600,666 - CSW01_03030 0.18 -1.1
600,673 - CSW01_03030 0.18 -0.8
600,675 - CSW01_03030 0.19 -2.5
600,691 - CSW01_03030 0.20 -2.0
600,701 - CSW01_03030 0.21 -0.6
600,912 + CSW01_03030 0.40 -0.2
600,912 + CSW01_03030 0.40 -2.2
600,920 - CSW01_03030 0.41 +0.3
600,924 + CSW01_03030 0.41 -0.7
600,949 + CSW01_03030 0.43 -0.4
600,955 - CSW01_03030 0.44 -1.7
601,000 + CSW01_03030 0.48 -4.0
601,000 + CSW01_03030 0.48 -1.4
601,000 + CSW01_03030 0.48 -0.8
601,008 - CSW01_03030 0.49 -0.3
601,008 - CSW01_03030 0.49 -1.5
601,008 - CSW01_03030 0.49 -3.2
601,081 - CSW01_03030 0.55 +1.2
601,097 + CSW01_03030 0.57 -3.4
601,126 + CSW01_03030 0.60 +0.2
601,126 + CSW01_03030 0.60 -1.4
601,152 + CSW01_03030 0.62 -1.8
601,158 + CSW01_03030 0.62 -2.2
601,158 + CSW01_03030 0.62 +0.2
601,163 + CSW01_03030 0.63 -1.8
601,166 - CSW01_03030 0.63 -1.5
601,181 + CSW01_03030 0.64 -2.9
601,181 + CSW01_03030 0.64 -1.2
601,181 + CSW01_03030 0.64 +0.5
601,181 + CSW01_03030 0.64 -4.3
601,181 + CSW01_03030 0.64 -3.1
601,181 + CSW01_03030 0.64 -2.4
601,181 + CSW01_03030 0.64 -0.3
601,181 + CSW01_03030 0.64 -1.7
601,181 + CSW01_03030 0.64 -1.5
601,181 + CSW01_03030 0.64 +0.8
601,184 - CSW01_03030 0.65 -4.2
601,186 + CSW01_03030 0.65 -2.3
601,186 + CSW01_03030 0.65 -1.0
601,189 - CSW01_03030 0.65 -1.2
601,189 - CSW01_03030 0.65 -3.4
601,189 - CSW01_03030 0.65 -3.2
601,189 - CSW01_03030 0.65 -3.5
601,189 - CSW01_03030 0.65 -1.4
601,189 - CSW01_03030 0.65 -1.1
601,189 - CSW01_03030 0.65 -1.2
601,189 - CSW01_03030 0.65 +0.3
601,310 + CSW01_03030 0.76 +0.3

Or see this region's nucleotide sequence